Can I use microViz with only relative abundance

david-barnett / microViz

R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

https://david-barnett.github.io/microViz/

GNU General Public License v3.0

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Closed SilasK closed 2 years ago

SilasK commented 2 years ago

ps_counts(input, warn = "error") : otu_table of counts is NOT available! Available otu_table contains non-zero values that are less than 1

SilasK commented 2 years ago

tax_filter created the error

SilasK commented 2 years ago

I fount there is a option use_counts

sorry