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david-barnett / microViz

R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
https://david-barnett.github.io/microViz/
GNU General Public License v3.0
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Error in dist_calc #69

Closed veverusha closed 1 year ago

veverusha commented 1 year ago

Hi! I'm going through the tutorials and have encountered an error in the microbiome preparation step. Anyone could advise?

ibd %>%

  • tax_transform(trans = "identity", rank = "Genus") %>%
  • dist_calc("bray")

Error in rlang::arg_match(arg = dist, multiple = FALSE, values = union(c("bray", : unused argument (multiple = FALSE)

veverusha commented 1 year ago

Updated rlang package (also phyloseq but likely not the one causing troubles) and it seems that have resolve it. Sorry for writing too soon!

david-barnett commented 1 year ago

okay this is actually handy to notify me about as it looks like I need to bump the rlang dependency version to 1.0.0 thanks :)