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david4096 / ga4gh-catalog

List the contents of a GA4GH server
MIT License
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Read group programs element #14

Open david4096 opened 8 years ago

david4096 commented 8 years ago

The programs of a readgroup let you reconstruct what command line calls were used to create the underlying data. Having these data renderable readgroups would be helpful. They are a linked list of items where each program call refers to the previous program call. I don't think we can assume they're in order because of that.

Here is where they appear in the schemas: https://github.com/ga4gh/schemas/blob/master/src/main/proto/ga4gh/reads.proto#L67 https://github.com/ga4gh/schemas/commit/e9ea99c5fadfb358fcf0c9b01997983b0c0f25d4#diff-25e5013485a6b83f4f09fd8bb3e8693aR46

david4096 commented 8 years ago

Can you link one of the long ones when you come across it?

alexanderDoria commented 8 years ago

here's a read group with a program length greater than 300