jackhump
commented
4 years ago Hi Cindy,
we don't have that feature right now, but if you're interested in visualising your sQTLs then you can look into running sqtlviztools, a rough R package for doing this. I'm not currently maintaining it but it should give you the code to set up a sQTL app: https://github.com/jackhump/sqtlviztools
Hi! I'm using leafcutter and FastQTL for sQTL mapping and I generated annotation files with gencode.annotation.gtf and leafviz. I'd like to annotate the significant sQTL/introns I identified. Correct me if I'm wrong, but it seems the leafviz annotation is customized for DS analysis. I wonder if there's a better way, instead of adjusting the prepare_results.R code, to annotate sQTL results (i.e. annotated, cryptic 5', ...). Thanks!