Error in differential_splicing(counts, numeric_x, confounders = confounders, : unused arguments (init = opt$init, seed = opt$seed).

davidaknowles / leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

http://davidaknowles.github.io/leafcutter/

Apache License 2.0

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Error in differential_splicing(counts, numeric_x, confounders = confounders, : unused arguments (init = opt$init, seed = opt$seed). #174

Open geng-lee opened 3 years ago

geng-lee commented 3 years ago

Error in differential_splicing(counts, numeric_x, confounders = confounders, : unused arguments (init = opt$init, seed = opt$seed). How to solve this problem?

scripts: /leafcutter/scripts/leafcutter_ds.R

Running differential splicing analysis...
Error in differential_splicing(counts, numeric_x, confounders = confounders,  : 
  unused arguments (init = opt$init, seed = opt$seed)
Execution halted

vinayakvsv commented 3 years ago

Hello. I am also encountering the same issue when running leafcutter_ds.R. Please advise on what might be the probable cause of the issue. Thanks.

jackhump commented 3 years ago

Hi both, we think this is due to the stan installation.

see #87 for latest installation instructions