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davidaknowles / leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
http://davidaknowles.github.io/leafcutter/
Apache License 2.0
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Devtools leafcutter installation error #259

Open DzvinkaYarish opened 2 months ago

DzvinkaYarish commented 2 months ago

Hi!

I've been trying to install leafcutter using various methods - the one that got me the furthest is this one https://github.com/davidaknowles/leafcutter/issues/188 However, I cannot find a way around this error: 

R/library/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:9:10: fatal error: tbb/tbb_stddef.h: No such file or directory
 #include <tbb/tbb_stddef.h>

It seems like a recent change in tbb library causes this (based on this thread https://www.reddit.com/r/bioinformatics/comments/1601hfr/installation_of_leafcutter_fails_with_fatal_error/).

Has anybody faced a similar issue?

mrunyan1 commented 2 months ago

I also recently encountered this error. I got around it by following the advice here #239.