davidcsterratt / retistruct

Computational reconstruction and transformation of flattened retinae
http://davidcsterratt.github.io/retistruct/
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matrix Dss and Sss in 'r.mat' file is empty #51

Open kid030 opened 3 years ago

kid030 commented 3 years ago

I am trying to read construction data into Matlab, but I found that the matrix Dss and Sss in the 'r.mat' file is empty. I tried the demo data, I had the same issue, is there a way to fix it? (The reconstruction works perfectly)

Thanks.

kid030 commented 3 years ago

I also tried to read from R by using "r <- retistruct.read.recdata(list(dataset="/path/to/reconstruction/directory"), check=FALSE)", however, the output is null.

HarrisonTCaddy commented 3 years ago

Hi,

I am also encountering this issue of having empty data in Dss and Sss when loading r.mat into Matlab.

guptadivyansh commented 2 years ago

I have the same problem. Dss inside r.mat is empty

kid030 commented 2 years ago

You could try this to export reconstructed coordinated data manually from R r <- retistruct.read.recdata(list(dataset="your directory"),check=FALSE) gfp = r[["featureSets"]][[1]][["data"]][["cells"]] write.csv(gfp,"your directory/gfpPoints.csv",row.names = FALSE);