daviddmc / NeSVoR

NeSVoR is a package for GPU-accelerated slice-to-volume reconstruction.
MIT License
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What parameters I should set to improve the separation of the fetal brain regions and eliminate the unwanted areas? #17

Open unicoco7 opened 11 months ago

unicoco7 commented 11 months ago

Thank you for your fantastic work! I've successfully run your open-source code for 3D reconstruction. However, after the reconstruction of the fetal brain, there are always some regions that are not of interest, while others are well-separated. Currently, I'm using the following parameters with nesvor reconstruct: nesvor reconstruct \ --input-stacks stack-1.nii.gz ... stack-N.nii.gz \ --thicknesses ... \ --output-volume volume.nii.gz \ --output-resolution 0.8 \ --segmentation \ --bias-field-correction Could you please advise on what parameters I should set to improve the separation of the fetal brain regions and eliminate the unwanted areas? image image