davidebolo1993 / VISOR

VarIant SimulatOR for short, long and linked reads
GNU Lesser General Public License v3.0
41 stars 11 forks source link

More flexible read identities for LASeR simulations #27

Closed tomvanschaik closed 9 months ago

tomvanschaik commented 1 year ago

Hello.

Thank you for this wonderful tool.

I would like to simulate long read data sets with different read qualities. However, because the badread identity arguments are limited to integers, I cannot simulate data sets with very high qualities. Would it be possible to accept floats instead of only integers? Badreads itself does accept floats.

From the code: badread.add_argument('--identity_min', help='minimum sequencing identity [90]', metavar='', default=90, type=int)

Thanks. Tom

davidebolo1993 commented 1 year ago

Hey @tomvanschaik,

sure. I'll push a fix in the next days.

Thanks,

Davide