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davidebolo1993 / VISOR

VarIant SimulatOR for short, long and linked reads
GNU Lesser General Public License v3.0
41 stars 11 forks source link

complex SV types not in list #3

Closed jiadong324 closed 4 years ago

jiadong324 commented 4 years ago

Hi,

Since you close the last issue, I raise a new one.

If I understand correctly from your deletion-inversion example, I could put some simple SVs adjacent to each other, and VISOR will produce such specific complex SVs. If so, it has to be created manually, since regions are selected randomly.

Thanks!

davidebolo1993 commented 4 years ago

Hi @jiadong324,

Indeed. For the time being, this is something that you can apply to manually-curated SVs. For example, you can generate some random deletions with the included R script and you can than manually edit the final BED adding flanking inversions, if it fits what you want.

Best,

Davide

jiadong324 commented 4 years ago

@davidebolo1993 Ok, I get it. Thanks!