Open asylvz opened 10 months ago
H @asylvz,
thanks for getting in touch. I'm really late at following up on VISOR's issues due to the very small amount of free time I have. I'm trying to fix things left in the past months. In order to have a sense of what is happening here I need more info on the previous HACk step - like reference, .bed, or haplotypes generated to get to understand if this is reproducible. Thanks,
Davide
Hello, I followed the step that you suggested but when generating reads from the fasta files, I get an error after the following command:
VISOR LASeR -g chr1_t2t.fa -s sims_small/ -b shorts.laser.simple.bed -o laser.2.out --coverage 5
But I don't have any issue with SHORtS (same input data)
VISOR SHORtS -g chr1_t2t.fa -s sims_small/ -b shorts.laser.simple.bed -o laser.1.out --coverage 5
Any idea?