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davidebolo1993 / VISOR

VarIant SimulatOR for short, long and linked reads
GNU Lesser General Public License v3.0
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Error models and quality models #37

Closed jyw-atgithub closed 7 months ago

jyw-atgithub commented 7 months ago

Dear @davidebolo1993 , I am using VISOR version 1.1.2. The help message of VISOR LASeR reported several error models and quality models for simulating long reads. May I know the corresponding technology of each model? For example,

model name tech
nanopore2023 Minion, R10.4.1 flow cell and Kit 14 ?

Thank you!

--error_model         error model. Can be "nanopore2023", "nanopore2020", "nanopore2018", "pacbio2016", "random" or a model provided by the user using instructions at https://github.com/rrwick/Badread/wiki/Generating-error-and-qscore-models [nanopore2023]
--qscore_model        quality score model. Can be "nanopore2023", "nanopore2020", "nanopore2018", "pacbio2016", "random", "ideal" or a model provided by  the user using instructions at https://github.com/rrwick/Badread/wiki/Generating-error-and-qscore-models [nanopore2023]
davidebolo1993 commented 7 months ago

Hey @jyw-atgithub,

VISOR internally calls Badread - you can refer to that page for further info on error and qscore models.

jyw-atgithub commented 7 months ago

Thank you!