duplicated entry in two different RefOGs

davidemms / Open_Orthobench

6 stars 5 forks source link

duplicated entry in two different RefOGs #1

Open xgrau opened 3 years ago

xgrau commented 3 years ago

Hi everyone,

I have observed that one Drosophila melanogaster gene is present in two orthogroups:

(base) [orthobench-tests]: grep FBpp0309618 RefOGs/*txt
RefOGs/RefOG021.txt:FBpp0309618
RefOGs/RefOG068.txt:FBpp0309618

I may be missing something but I'm quite sure this is unintentional, because the benchmark.py script raises an error when this happens (here).

Thanks for this great resource.

Best regards,

Xavier Grau-Bové

wuzhitian111 commented 5 days ago

I am also using this gene list now. I searched for FBpp0309618 on the Internet and I think it should belong to RefOG68 (Pecanex). RefOG21 (Filaggrins) seems to be non-existent in insects?

By the way, I think the line 140 you are referring to is about checking predicted orthogroups, not RefOG itself. So there is no error in practice.