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davidemms / OrthoFinder

Phylogenetic orthology inference for comparative genomics
https://davidemms.github.io/
GNU General Public License v3.0
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Could I get A Pruned alignment? #480

Open SPark-botanist opened 3 years ago

SPark-botanist commented 3 years ago

Hello David,

I was wondering if I could get each pruned alignment file that generated when creating the supermatrix. I looked at all of the resulting files, but none of them. I know that I can get the sequence files of orthogroups in "Orthogroup_Sequences" directory. But, They contain all sequences. This is not single copy orthologues sequences. it is from Multiple copy orthologue sequences.

It would be great if I could get a pruned alignment file for each orthologs. Is it possible?

Thank you so much for your help!!

Best regards,

Seongjun

davidemms commented 3 years ago

Hi Seongjun

That's a good idea and definitely something I'd consider, but I am working on a lot of new developments at the moment and so it's unlikely that I'd be able to do anything very soon.

All the best David

SPark-botanist commented 3 years ago

Hi David,

Thank you very much for considering that! I am looking forward to new results.