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davidemms / OrthoFinder

Phylogenetic orthology inference for comparative genomics
https://davidemms.github.io/
GNU General Public License v3.0
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Failed to execute script orthofinder #558

Open lisiruiyu opened 3 years ago

lisiruiyu commented 3 years ago

I have downloaded OrthoFinder-2.5.2.tar.gz,After unzipping, I started to execute the code：orthofinder -f ExampleData Log.txt

OrthoFinder version 2.5.2 Copyright (C) 2014 David Emms

2021-05-09 20:58:07 : Starting OrthoFinder 2.5.2 4 thread(s) for highly parallel tasks (BLAST searches etc.) 1 thread(s) for OrthoFinder algorithm

Checking required programs are installed

Traceback (most recent call last): File "orthofinder.py", line 7, in File "scripts_of/main.py", line 1719, in main File "scripts_of/main.py", line 1310, in CheckDependencies File "scripts_of/program_caller.py", line 188, in TestSearchMethod File "scripts_of/program_caller.py", line 170, in CallSearchMethod_DB File "scripts_of/program_caller.py", line 202, in _CallMethod File "scripts_of/program_caller.py", line 285, in _GetCommand File "scripts_of/program_caller.py", line 243, in _ReplaceVariables UnicodeDecodeError: 'ascii' codec can't decode byte 0xe4 in position 14: ordinal not in range(128) [221160] Failed to execute script orthofinder

davidemms commented 3 years ago

Hi

It sounds like OrthoFinder can't handle the non-ascii characters in your path, "下载". I will see if I can make some changes to the code so that it will be able to in the future. For now, I think it should work if you create a directory for your OrthoFinder work using ascii characters.

Best wishes David