Open wuyudelan opened 2 years ago
Also encountering the same issue. mmseqs is available through my path, but OrthoFinder doesn't agree giving the error posted above.
I'm using the recent glibc release for v2.5.4.
Hello, I have the same issue with 2.5.4 when using the Docker container davidemms/orthofinder:2.5.4
Any update on that problem ?
Hello, i also met this problem. Does anyone know how to solve this problem(灬ꈍ ꈍ灬)
I'm also experiencing this issue with Orthofinder 2.5.4 and mmseqs2 14.7e284 (the latest release).
Is Orthofinder tied to a particular mmseqs2 version?
Looks like this is fixed in the code, but there has not been a release that includes the fix. Cloning the repository and running the orthofinder.py script from the cloned repo solves the issue.
Hi,
I had the same problem and I tried to update to the latest version as suggested by @davidecarlson. However, that did not solved my problem. But I changed something in the config file and now I can use mmseq. I did the following:
I replaced tmp
in lines 58 and 59 of scripts_of/config.json
with ./tmp
The good thing is that, I can run Orthofinder with mmseq. The bad thing is that I have to remove the tmp folder manually afterwards. I am using a server and I noticed the problem is permissions of tmp folder.
OrthoFinder version 2.5.4 installed by conda:
However, conda has installed mmseqs, I can also run it with one of the seq files.
Update mmseqs with conda can not fix it.
After update, MMseqs2 Version: 13.45111