lalalagartija
commented
2 years ago I do the first one because taking the longest protein would result in over-annotation. Automatic annotation tools are usually bad. Or do you mean a tool to determine which of the ORFs can give you the function for the whole OG ? Maybe like finding the centroid ORF ? Maybe try Uclust
Dear OrthoFinder, Thanks for your such amazing work. There are multiple protein sequences under each OG, how do I determine the final protein function of each OG. Two ideas, first, annotate all OG members and finally take the most as the final annotation; or take the longest protein annotation in OG as the final annotation, seems like the first one is more reasonable? Or is there any tool to get the best function of OG directly? Thansk a lot.