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davidemms / OrthoFinder

Phylogenetic orthology inference for comparative genomics
https://davidemms.github.io/
GNU General Public License v3.0
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Finding how many clusters and genes organisms have #758

Open mictadlo opened 2 years ago

mictadlo commented 2 years ago

Hi, I ran orthofinder with 5 species. Next, I would like to pick only 3 of them and find out:

  1. How many clusters and genes are unique to species 1 and species 2?
  2. How many clusters and genes do both species 1 and 2 share together?

How could I filter out those values from the orthofinder results?

Thank you in advance,

Best wishes,

Michal

cfz1998 commented 1 year ago

Hi. @mictadlo The answer is in your Orthogroups.GeneCount.tsv file.

Best wishes! --zcf