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davidemms / OrthoFinder

Phylogenetic orthology inference for comparative genomics
https://davidemms.github.io/
GNU General Public License v3.0
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Orthogroups.txt and Orthogroups.csv files do not match #864

Open glmaala opened 10 months ago

glmaala commented 10 months ago

The txt file has more orthogroups that the csv file (there are more in the former). Is there a reason for this? I checked the orthogroup gene count file and it matches the counts in the csv file.

glmaala commented 10 months ago

i reviewed the two files and realized that the txt one has the singletons (i.e. unassigned genes), which i figured can't be considered orthogroups. though each one is given their own orthogroup ID.