codecov[bot]
commented
2 years ago Codecov Report
Merging #124 (41d1643) into master (bf19092) will decrease coverage by
0.85%. The diff coverage is80.76%.
@@ Coverage Diff @@
## master #124 +/- ##
==========================================
- Coverage 68.07% 67.22% -0.86%
==========================================
Files 92 97 +5
Lines 15993 16798 +805
==========================================
+ Hits 10888 11293 +405
- Misses 5105 5505 +400 | Flag | Coverage Δ | |
|---|---|---|
| unittests | 67.22% <80.76%> (-0.86%) |
:arrow_down: |
Flags with carried forward coverage won't be shown. Click here to find out more.
| Impacted Files | Coverage Δ | |
|---|---|---|
| findNeighbour4_lsmanager.py | 0.00% <0.00%> (ø) |
|
| findNeighbour4_server.py | 0.00% <ø> (-26.17%) |
:arrow_down: |
| findn/seq2json.py | 95.83% <ø> (ø) |
|
| fn4_load_multifasta.py | 0.00% <0.00%> (ø) |
|
| fn4_pca.py | 0.00% <0.00%> (ø) |
|
| pca/pcadb.py | 0.00% <0.00%> (ø) |
|
| test/test_tree.py | 64.70% <0.00%> (ø) |
|
| catwalk/pycw_client.py | 79.78% <57.14%> (-0.56%) |
:arrow_down: |
| test/test_common_utils.py | 95.23% <66.66%> (ø) |
|
| findn/rdbmsstore.py | 80.09% <76.74%> (-0.01%) |
:arrow_down: |
| ... and 14 more |
Continue to review full report at Codecov.
Legend - Click here to learn more
Δ = absolute <relative> (impact),ø = not affected,? = missing dataPowered by Codecov. Last update bf19092...41d1643. Read the comment docs.
Maintains a 'localstore' of sequence data in the form of a tar file. This increases the speed of a) restarting - restart takes about 30 mins for every 1 million samples b) PCA - analysis is faster New component localstore mediates this. cw_seqComparer and PCA modules modified to support use of this. Addresses #114
Associated documentation
Standardise unit test temporary file location
Increase timeout of catwalk startup.