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davidiommi / Pytorch--3D-Medical-Images-Segmentation--SALMON

Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.
https://zmpbmt.meduniwien.ac.at/wissenschaft-forschung/qimp/
MIT License
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Monai library error #1

Closed anjieyin closed 3 years ago

anjieyin commented 3 years ago

First of all, thanks for the great library ! It has really accelerated my work being able to start with a nice implementation of 3D unets. But I encountered the following problems when running the code of version_1, do you have any good suggestions for me? Looking forward to your reply. image

davidiommi commented 3 years ago

Can you share more screens? To me, it seems something is not working when you load the data for the network or there is a particular transformation in the augmentation process that creates a problem.

Did you try to run check_loader_patches and play around with the transformations? It should give you an idea if the loader to the network works.

davidiommi commented 3 years ago

Most probably is the wrong Monai version installed. They do update them periodically and there are compatibility issues. As I previously said, try to check which transforms is giving problems with checkloader_patches