davidliwei / mageck

Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)
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input count table format #1

Closed fk506cni closed 4 years ago

fk506cni commented 4 years ago

Hi I want to know about format of input count table. I have chip data about human cell line data and I want to make a model by mageck MLE. I found some of sgRNAs in my data have multiple target genes.

However, in example data leukemia.new.csv, every sgRNA looks have single target gene. How should I describe "Gene" column in count table when the sgRNA have more then two target genes.

Thank you.