davidpng / FCS_Database

Program to scrape an FCS directory of metadata

GNU General Public License v3.0

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Build make ml input #48

Closed hermands closed 9 years ago

hermands commented 9 years ago

Please review

fix issue with failing make_features on second FCS_obj
test whether function is returning last case_tube_idx for each case using:
- ~hermands/repos/flow_anal/dev/test_make_metadb.sh ~hermands/FCS_2014/ 1000
- ~/repos/flow_anal/dev/test_run_custom.sh ~/FCS_2014/ fcs_meta.db /home/local/AMC/hermands/working/myeloid/TESTS/test_cases.txt --tube 'Myeloid 1'
- NOTE that annotation indicates how many case_tube_idx's
- NOTE!!! that 'Myeloid 1' is not being properly passed by bash script, so will need to manually run that step:
  - /home/local/AMC/hermands/repos/flow_anal/dev/../flowanal.py -v make_features /home/local/AMC/hermands/FCS_2014/ -db fcs_meta.db --feature-hdf5 /home/local/AMC/hermands/working/myeloid/TESTS/01092015/fcs_features.hdf5 --tube 'Myeloid 1'
If set, please merge into master