Add hdf5 meta info

[hermands]

Please take a look. I believe I fixed handling and logic.

• Should be selecting most recent cti for each case

Tests I ran include: MYELOID:

• cd ~hermands/working/myeloid/TESTS/01102015
• ~/repos/flow_anal/dev/test_make_metadb.sh ~/FCS_2014/ 500
• /home/local/AMC/hermands/repos/flow_anal/dev/../flowanal.py -v make_features /home/local/AMC/hermands/FCS_2014/ -db fcs_meta.db --feature-hdf5 /home/local/AMC/hermands/working/myeloid/TESTS/01102015/fcs_features.hdf5 --tube 'Myeloid 1' --date 2014-12-07 2014-12-08
• ~/repos/flow_anal/dev/test_run_custom.sh ~/FCS_2014/ fcs_meta.db ../test_cases.txt

HODGKIN:

• cd ~hermands/working/Hodgkin/TESTS/01102015
• ~/repos/flow_anal/dev/test_make_metadb.sh /home/local/AMC/ngdavid/clinical_cHL_cases/
• /home/local/AMC/hermands/repos/flow_anal/dev/../flowanal.py -v make_features /home/local/AMC/ngdavid/clinical_cHL_cases/ -db fcs_meta.db --feature-hdf5 fcs_features.hdf5 --date 2008-12-01 2009-01-01
• ~/repos/flow_anal/dev/test_run_custom.sh /home/local/AMC/ngdavid/clinical_cHL_cases/ fcs_meta.db ../../test_cases.txt

NOTE: make_features.py didn't like this case_tube_idx (although it must have passed the first time...[in meta db load]) INFO make_features 73 Case: 08-18308, Case_tube_idx: 472, File: Hodgkin_Cases_2008_2013/08-18308/08-18308_Hodgkins-fix.fcs [6 of 11] /home/local/AMC/hermands/repos/flow_anal/FlowAnal/FCS.py:64: UserWarning: loading FCS as empty because unsupported mode or datatype warnings.warn("loading FCS as empty because %s" % e) Skipping FCS /home/local/AMC/ngdavid/clinical_cHL_cases/Hodgkin_Cases_2008_2013/08-18308/08-18308_Hodgkins-fix.fcs because of unknown error related to: <type 'exceptions.AttributeError'>

[davidpng]

in regards to Myeloid

1. I need permission to access FCS_2014/500.
2. I see only 3 files in the ML_input HDF5 file ['14-22828', '14-22838', '14-22847'] I don't know if that is correct without seeing what is in FCS_2014/500. If it were a typical day, i would have expected more cases.
3. Features appear to have extracted properly for these 3 cases and the annotation are correct from annots.txt