search

davidrasm / phylo-particleMCMC

Phylodynamic inference using particle filtering and particle MCMC. Implemented in Matlab. See Rasmussen et al. (2011) for a full description of the algorithms: https://doi.org/10.1371/journal.pcbi.1002136
4 stars 0 forks source link

About simulated data #1

Open whzhuscu opened 1 year ago

whzhuscu commented 1 year ago

Sorry to bother you, but I am wondering if you could share the code that generated the simulation dataset SIR_endemic_sim3_mockData, SIR_endemic_sim3_coalTimes and SIR_covmat_041111. Thanks.

whzhuscu commented 1 year ago

This may sound like a silly question, but why is the 'dt' set to 0.01?

> epi_params$dt
     [,1]
[1,] 0.01