Meeting Log 10-09-19

[davisbk]

Brian's To Do

• [x] Read Parsons' PhD Thesis
  • [x] Chapter 1
  • [x] Chapter 2
  • [x] Conclusion
• [ ] Focus on one condition
  • [ ] Perform analysis on the one condition
  • [x] Plot the lineage of the best individual
    • [x] Condition vs Control with one point per seed, the point representing the mean over the last 10,000 generations
    • [x] Proportions of change from the control
  • [x] Write up analysis in a Jupyter notebook as if it were for the thesis
  • [x] Create plot with control and condition on it
  • [x] Use a sliding window (~10 generations?) to smooth the graph
• [ ] Use Inkscape to create images describing output header properties (bp in a CDS, bp in a functional genome, etc.)
• [x] Fix schedule to include analysis

  Berenice's To Do

• [ ] Find adviser for Brian after December
• [ ] Find out if a department presentation is still necessary

[bebatut]

In term of plots, we also mentioned:

• Condition vs Control with 1 point per seed, mean over the last 10,000 generations
• Proportion of changes