Closed LTLA closed 8 years ago
Yes, good point about removeBatchEffect. Just because it can be used doesn't mean it should. Removing this would also simplify the figure, which is needed. I'll drop that section from the text and revise the figure. That can make the figure a single-column with three panels, which will be much more readable.
removeBatchEffect depends on a known batch effect, so why is it in the paragraph with unknown effects? Also, it doesn't seem to work properly in 4C (or at least, not as well as 4B), so why not put your best foot forward and just leave out the rest?
Perhaps adding an extra sentence at the end to conclude: