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dbdimitrov / BingleSeq

BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
MIT License
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Gene Ontology for mouse not working #9

Closed akhileshmishra0908 closed 2 years ago

akhileshmishra0908 commented 3 years ago

Hi,

I want to use BingleSeq for RNASeq data analysis on Mouse genome but it continuously throwing the same error of “Incorrect Gene Type” (Please find the attachment). I tried all the possibility but I am not able to resolve it.

Further, in gene Ontology section, there are two time mm9 genome is mentioned in the “Select Genome” section. What is the explanation behind it?

I am attaching a sample and meta data file for your reference. Your response will be highly appreciated.

design_BingleSeq.txt Image Sample_Data.txt

Thanks & Best Regards,

Akhilesh Mishra, Ph.D.

dbdimitrov commented 3 years ago

Dear Akhilesh Mishra,

Thank you for opening an issue.

I followed up on your example and noted a couple of things that might be the cause and appropriately updated BingleSeq. So, I believe the issues should now be resolved and you should be able to obtain appropriate GO and footprint results for your data. However, I was unable to get meaningful results due to the small size of the sample data.

Please let me know if you notice any issues.

Regards, Daniel