EJFielding
commented
3 years ago My other Mac MacOS Catalina does not crash when running the tests. I did the same Conda installation on both. Very strange.
=============================================== test session starts ================================================
platform darwin -- Python 3.7.10, pytest-6.2.5, py-1.10.0, pluggy-1.0.0
rootdir: /Users/fielding/tools/RAiDER
collected 258 items
test/test_checkArgs.py ................................................ [ 18%]
test/test_chunking.py ......... [ 22%]
test/test_delay.py . [ 22%]
test/test_dem.py ......... [ 25%]
test/test_gnss.py .... [ 27%]
test/test_hdf5_parallel.py s [ 27%]
test/test_integration.py ... [ 29%]
test/test_interpolator.py ............................................ [ 46%]
test/test_llreader.py ...... [ 48%]
test/test_losreader.py ........................ [ 57%]
test/test_scenario_1.py F...sF [ 60%]
test/test_scenario_2.py F [ 60%]
test/test_util.py ................s............... [ 72%]
test/cli/test_argument_parsers.py .... [ 74%]
test/cli/test_validators.py ............................................. [ 91%]
test/weather_model/test_downloaders.py ... [ 93%]
test/weather_model/test_processWM.py .. [ 93%]
test/weather_model/test_weather_model.py ................ [100%]
===================================================== FAILURES =====================================================
______________________________________________ test_tropo_delay_ERAI _______________________________________________
tmp_path = PosixPath('/private/var/folders/92/tx_tbh3d05x_gpx6ydy5nmd94bbnb9/T/pytest-of-fielding/pytest-3/test_tropo_delay_ERAI0')
@pytest.mark.long
def test_tropo_delay_ERAI(tmp_path):
'''
Scenario:
1: Small area, ERAI, Zenith delay
'''
> core_test_tropo_delay(tmp_path, modelName="ERAI")
/Users/fielding/tools/RAiDER/test/test_scenario_1.py:28:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/Users/fielding/tools/RAiDER/test/test_scenario_1.py:134: in core_test_tropo_delay
(_, _) = tropo_delay(args)
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/RAiDER-0.0.1-py3.7-macosx-10.9-x86_64.egg/RAiDER/delay.py:121: in tropo_delay
makePlots=True
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/RAiDER-0.0.1-py3.7-macosx-10.9-x86_64.egg/RAiDER/processWM.py:88: in prepareWeatherModel
zref=zref,
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/RAiDER-0.0.1-py3.7-macosx-10.9-x86_64.egg/RAiDER/models/weatherModel.py:201: in load
self.load_weather(*args, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <RAiDER.models.erai.ERAI object at 0x7fe1595e2f10>, args = (), kwargs = {}
def load_weather(self, *args, **kwargs):
'''
Consistent class method to be implemented across all weather model types.
As a result of calling this method, all of the variables (x, y, z, p, q,
t, wet_refractivity, hydrostatic refractivity, e) should be fully
populated.
'''
> self._load_model_level(*self.files)
E AttributeError: 'ERAI' object has no attribute '_load_model_level'
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/RAiDER-0.0.1-py3.7-macosx-10.9-x86_64.egg/RAiDER/models/ecmwf.py:69: AttributeError
----------------------------------------------- Captured stdout call -----------------------------------------------
Weather model ERA-I is available from 1979-01-01 00:00:00-2019-08-31 00:00:00
2021-10-02 20:35:57 ECMWF API python library 1.6.1
2021-10-02 20:35:57 ECMWF API at https://api.ecmwf.int/v1
2021-10-02 20:35:58 Welcome Eric Fielding
WARNING: Query point bounds are 15.35/18.65/-103.65/-99.35
WARNING: Query time: 2018-01-03 23:00:00
ERROR: "ecmwf.API error 1: User 'ericfielding' has not access to datasets/interim. Please accept the terms and conditions at http://apps.ecmwf.int/datasets/licences/general"
Traceback (most recent call last):
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/RAiDER-0.0.1-py3.7-macosx-10.9-x86_64.egg/RAiDER/models/ecmwf.py", line 150, in _fetch
out
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/RAiDER-0.0.1-py3.7-macosx-10.9-x86_64.egg/RAiDER/models/ecmwf.py", line 192, in _get_from_ecmwf
"target": out, # target: the name of the output file.
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/ecmwfapi/api.py", line 594, in retrieve
verbose=self.verbose,
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/ecmwfapi/api.py", line 418, in __init__
info = self.connection.call("%s/%s/%s" % (self.url, self.service, "info")).get(
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/ecmwfapi/api.py", line 148, in wrapped
return func(self, *args, **kwargs)
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/ecmwfapi/api.py", line 350, in call
raise APIException("ecmwf.API error 1: %s" % (self.last["error"],))
ecmwfapi.api.APIException: "ecmwf.API error 1: User 'ericfielding' has not access to datasets/interim. Please accept the terms and conditions at http://apps.ecmwf.int/datasets/licences/general"
------------------------------------------------ Captured log call -------------------------------------------------
DEBUG RAiDER:delay.py:100 Starting to run the weather model calculation
DEBUG RAiDER:delay.py:101 Time type: <class 'datetime.datetime'>
DEBUG RAiDER:delay.py:102 Time: 20180103
DEBUG RAiDER:delay.py:103 Flag type is files
DEBUG RAiDER:delay.py:104 DEM/height type is "dem"
DEBUG RAiDER:delay.py:110 Beginning weather model pre-processing
DEBUG RAiDER:delay.py:111 Download-only is False
INFO RAiDER:weatherModel.py:247 Weather model ERA-I is available from 1979-01-01 00:00:00-2019-08-31 00:00:00
WARNING RAiDER:ecmwf.py:153 Query point bounds are 15.35/18.65/-103.65/-99.35
WARNING RAiDER:ecmwf.py:154 Query time: 2018-01-03 23:00:00
ERROR RAiDER:ecmwf.py:155 "ecmwf.API error 1: User 'ericfielding' has not access to datasets/interim. Please accept the terms and conditions at http://apps.ecmwf.int/datasets/licences/general"
Traceback (most recent call last):
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/RAiDER-0.0.1-py3.7-macosx-10.9-x86_64.egg/RAiDER/models/ecmwf.py", line 150, in _fetch
out
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/RAiDER-0.0.1-py3.7-macosx-10.9-x86_64.egg/RAiDER/models/ecmwf.py", line 192, in _get_from_ecmwf
"target": out, # target: the name of the output file.
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/ecmwfapi/api.py", line 594, in retrieve
verbose=self.verbose,
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/ecmwfapi/api.py", line 418, in __init__
info = self.connection.call("%s/%s/%s" % (self.url, self.service, "info")).get(
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/ecmwfapi/api.py", line 148, in wrapped
return func(self, *args, **kwargs)
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/ecmwfapi/api.py", line 350, in call
raise APIException("ecmwf.API error 1: %s" % (self.last["error"],))
ecmwfapi.api.APIException: "ecmwf.API error 1: User 'ericfielding' has not access to datasets/interim. Please accept the terms and conditions at http://apps.ecmwf.int/datasets/licences/general"
______________________________________________ test_tropo_delay_GMAO _______________________________________________
tmp_path = PosixPath('/private/var/folders/92/tx_tbh3d05x_gpx6ydy5nmd94bbnb9/T/pytest-of-fielding/pytest-3/test_tropo_delay_GMAO0')
@pytest.mark.long
def test_tropo_delay_GMAO(tmp_path):
'''
Scenario:
1: Small area, GMAO, Zenith delay
'''
> core_test_tropo_delay(tmp_path, modelName="GMAO")
/Users/fielding/tools/RAiDER/test/test_scenario_1.py:82:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
tmp_path = PosixPath('/private/var/folders/92/tx_tbh3d05x_gpx6ydy5nmd94bbnb9/T/pytest-of-fielding/pytest-3/test_tropo_delay_GMAO0')
modelName = 'GMAO'
def core_test_tropo_delay(tmp_path, modelName):
'''
Scenario:
1: Small area, Zenith delay
'''
lats = gdal_open(os.path.join(
SCENARIO_DIR, 'geom', 'lat.dat'
))
lons = gdal_open(os.path.join(
SCENARIO_DIR, 'geom', 'lon.dat'
))
if modelName == 'ERAI':
time = datetime.datetime(2018, 1, 3, 23, 0)
elif modelName == 'NCMR':
time = datetime.datetime(2018, 7, 1, 0, 0)
else:
time = datetime.datetime(2020, 1, 3, 23, 0)
wmLoc = os.path.join(SCENARIO_DIR, 'weather_files')
if not os.path.exists(wmLoc):
os.mkdir(wmLoc)
_, model_obj = modelName2Module(modelName)
wet_file, hydro_file = makeDelayFileNames(
time, Zenith, "envi", modelName, tmp_path
)
with pushd(tmp_path):
# packing the dictionairy
args = {}
args['los'] = Zenith
args['lats'] = lats
args['lons'] = lons
args['ll_bounds'] = (15.75, 18.25, -103.24, -99.75)
args['heights'] = ("dem", os.path.join(TEST_DIR, "test_geom", "warpedDEM.dem"))
args['pnts_file'] = 'lat_query_points.h5'
args['flag'] = "files"
args['weather_model'] = {"type": model_obj(), "files": None, "name": modelName}
args['wmLoc'] = wmLoc
args['zref'] = 20000.
args['outformat'] = "envi"
args['times'] = time
args['out'] = tmp_path
args['download_only'] = False
args['wetFilenames'] = wet_file
args['hydroFilenames'] = hydro_file
args['verbose'] = True
(_, _) = tropo_delay(args)
# get the results
wet = gdal_open(wet_file)
hydro = gdal_open(hydro_file)
true_wet = gdal_open(
os.path.join(
SCENARIO_DIR,
modelName + "/wet.envi"
),
userNDV=0.
)
true_hydro = gdal_open(
os.path.join(
SCENARIO_DIR,
modelName + "/hydro.envi"
),
userNDV=0.
)
# get the true delay from the weather model
> assert np.nanmax(np.abs((wet - true_wet) / true_wet)) < _RTOL
E AssertionError: assert 0.012336466 < 0.01
E + where 0.012336466 = <function nanmax at 0x7fe1c8317440>(array([[ nan, nan, nan, nan, nan,\n nan, nan, nan, ...141, 0.00628924, 0.00521209,\n 0.00344014, nan, nan, 0.00389785, 0.00502395]],\n dtype=float32))
E + where <function nanmax at 0x7fe1c8317440> = np.nanmax
E + and array([[ nan, nan, nan, nan, nan,\n nan, nan, nan, ...141, 0.00628924, 0.00521209,\n 0.00344014, nan, nan, 0.00389785, 0.00502395]],\n dtype=float32) = <ufunc 'absolute'>(((array([[ nan, nan, nan, nan, nan,\n nan, nan, nan, ...486, 0.12377633, 0.1724519 ,\n 0.17415401, 0.16796733, 0.15622063, 0.09607986, 0.09343264]],\n dtype=float32) - array([[ nan, nan, nan, nan, nan,\n nan, nan, nan, ...807, 0.12300274, 0.17155772,\n 0.17355695, nan, nan, 0.09570681, 0.09296558]],\n dtype=float32)) / array([[ nan, nan, nan, nan, nan,\n nan, nan, nan, ...807, 0.12300274, 0.17155772,\n 0.17355695, nan, nan, 0.09570681, 0.09296558]],\n dtype=float32)))
E + where <ufunc 'absolute'> = np.abs
/Users/fielding/tools/RAiDER/test/test_scenario_1.py:155: AssertionError
----------------------------------------------- Captured stdout call -----------------------------------------------
WARNING: Weather model already exists, please remove it ("['/Users/fielding/tools/RAiDER/test/scenario_1/weather_files/GMAO_2020_01_03_T23_00_00.nc']") if you want to download a new one.
Extent of the weather model is (xmin, ymin, xmax, ymax):-104.22, 15.12, -99.22, 18.88
Extent of the input is (xmin, ymin, xmax, ymax): -103.25, 15.75, -99.75, 18.25
WARNING: The processed weather model file already exists, so I will use that.
Finished writing data to /private/var/folders/92/tx_tbh3d05x_gpx6ydy5nmd94bbnb9/T/pytest-of-fielding/pytest-3/test_tropo_delay_GMAO0/GMAO_wet_20200103T230000_std.envi
------------------------------------------------ Captured log call -------------------------------------------------
DEBUG RAiDER:delay.py:100 Starting to run the weather model calculation
DEBUG RAiDER:delay.py:101 Time type: <class 'datetime.datetime'>
DEBUG RAiDER:delay.py:102 Time: 20200103
DEBUG RAiDER:delay.py:103 Flag type is files
DEBUG RAiDER:delay.py:104 DEM/height type is "dem"
DEBUG RAiDER:delay.py:110 Beginning weather model pre-processing
DEBUG RAiDER:delay.py:111 Download-only is False
WARNING RAiDER:processWM.py:52 Weather model already exists, please remove it ("['/Users/fielding/tools/RAiDER/test/scenario_1/weather_files/GMAO_2020_01_03_T23_00_00.nc']") if you want to download a new one.
INFO RAiDER:weatherModel.py:447 Extent of the weather model is (xmin, ymin, xmax, ymax):-104.22, 15.12, -99.22, 18.88
INFO RAiDER:weatherModel.py:449 Extent of the input is (xmin, ymin, xmax, ymax): -103.25, 15.75, -99.75, 18.25
WARNING RAiDER:processWM.py:92 The processed weather model file already exists, so I will use that.
DEBUG RAiDER:delay.py:133 Beginning DEM calculation
DEBUG RAiDER:delay.py:137 DEM height range for the queried region is -5.29-2259.36 m
DEBUG RAiDER:delay.py:146 Lats shape is (11, 15)
DEBUG RAiDER:delay.py:149 lat/lon box is 15.750000/18.250000/-103.250000/-99.750000 (SNWE)
DEBUG RAiDER:delay.py:170 Beginning line-of-sight calculation
DEBUG RAiDER:delay.py:40 Beginning delay calculation
DEBUG RAiDER:delay.py:41 Max integration height is 20000.0 m
DEBUG RAiDER:delay.py:42 Reference integration step is 15.0 m
DEBUG RAiDER:delay.py:71 Finished delay calculation
INFO RAiDER:delay.py:214 Finished writing data to /private/var/folders/92/tx_tbh3d05x_gpx6ydy5nmd94bbnb9/T/pytest-of-fielding/pytest-3/test_tropo_delay_GMAO0/GMAO_wet_20200103T230000_std.envi
DEBUG RAiDER:utilFcns.py:129 Using user-supplied NoDataValue
DEBUG RAiDER:utilFcns.py:129 Using user-supplied NoDataValue
________________________________________________ test_computeDelay _________________________________________________
tmp_path = PosixPath('/private/var/folders/92/tx_tbh3d05x_gpx6ydy5nmd94bbnb9/T/pytest-of-fielding/pytest-3/test_computeDelay0')
@pytest.mark.long
def test_computeDelay(tmp_path):
'''
Scenario to use:
2: GNSS station list
'''
wetName = 'stations_with_Delays.csv'
wetFile = os.path.join(SCENARIO_DIR, wetName)
# Not used for station file input, only passed for consistent input arguments
hydroFile = wetFile
# load the weather model type and date for the given scenario
wmLoc = os.path.join(SCENARIO_DIR, 'weather_files')
true_delay = os.path.join(SCENARIO_DIR, 'ERA5_true_GNSS.csv')
station_file = os.path.join(SCENARIO_DIR, 'stations.csv')
copyfile(station_file, wetFile)
stats = pd.read_csv(station_file)
lats = stats['Lat'].values
lons = stats['Lon'].values
_, model_obj = modelName2Module('ERA5')
with pushd(tmp_path):
# packing the dictionairy
args = {}
args['los'] = Zenith
args['lats'] = lats
args['lons'] = lons
args['ll_bounds'] = (33.746, 36.795, -118.312, -114.892)
args['heights'] = ('merge', [wetFile])
args['pnts_file'] = 'ERA5_true_GNSS_query_points.h5'
args['flag'] = "station_file"
args['weather_model'] = {"type": model_obj(), "files": None, "name": "ERA5"}
args['wmLoc'] = None
args['zref'] = 20000.
args['outformat'] = "csv"
args['times'] = datetime(2020, 1, 3, 23, 0, 0)
args['out'] = tmp_path
args['download_only'] = False
args['wetFilenames'] = wetFile
args['hydroFilenames'] = hydroFile
args['verbose'] = True
(_, _) = tropo_delay(args)
# get the results
est_delay = pd.read_csv(wetFile)
true_delay = pd.read_csv(true_delay)
# get the true delay from the weather model
> assert np.nanmax(np.abs((est_delay['wetDelay'].values - true_delay['wetDelay'].values) / true_delay['wetDelay'].values)) < _RTOL
E ValueError: operands could not be broadcast together with shapes (9,) (8,)
/Users/fielding/tools/RAiDER/test/test_scenario_2.py:72: ValueError
----------------------------------------------- Captured stdout call -----------------------------------------------
Weather model ERA-5 is available from 1950-01-01 00:00:00-Present
WARNING: A DEM already exists in /Users/fielding/tools/RAiDER/test/scenario_2, checking extents
Finished writing data to /Users/fielding/tools/RAiDER/test/scenario_2/stations_with_Delays.csv
----------------------------------------------- Captured stderr call -----------------------------------------------
------------------------------------------------ Captured log call -------------------------------------------------
DEBUG RAiDER:delay.py:100 Starting to run the weather model calculation
DEBUG RAiDER:delay.py:101 Time type: <class 'datetime.datetime'>
DEBUG RAiDER:delay.py:102 Time: 20200103
DEBUG RAiDER:delay.py:103 Flag type is station_file
DEBUG RAiDER:delay.py:104 DEM/height type is "merge"
DEBUG RAiDER:delay.py:110 Beginning weather model pre-processing
DEBUG RAiDER:delay.py:111 Download-only is False
INFO RAiDER:weatherModel.py:247 Weather model ERA-5 is available from 1950-01-01 00:00:00-Present
DEBUG RAiDER:processWM.py:100 Number of weather model nodes: 9690
DEBUG RAiDER:processWM.py:104 Shape of weather model: (15, 17, 38)
DEBUG RAiDER:processWM.py:108 Bounds of the weather model: 33.35/36.85/-118.71/-114.71 (SNWE)
DEBUG RAiDER:processWM.py:110 Weather model: ERA-5
DEBUG RAiDER:processWM.py:113 Mean value of the wet refractivity: 6.034212
DEBUG RAiDER:processWM.py:117 Mean value of the hydrostatic refractivity: 124.192192
DEBUG RAiDER:processWM.py:119
======Weather Model class object=====
Weather model time: 2020-01-03 23:00:00
Latitude resolution: 0.2
Longitude resolution: 0.2
Native projection: epsg:4326
ZMIN: -100.0
ZMAX: 15000.0
k1 = 0.776
k2 = 0.233
k3 = 3750.0
Humidity type = q
=====================================
Class name: ea
Dataset: era5
=====================================
A: []
B: []
Number of points in Lon/Lat = 15/17
Total number of grid points (3D): 9690
=====================================
DEBUG RAiDER:delay.py:133 Beginning DEM calculation
WARNING RAiDER:dem.py:117 A DEM already exists in /Users/fielding/tools/RAiDER/test/scenario_2, checking extents
DEBUG RAiDER:delay.py:137 DEM height range for the queried region is 0.10-0.50 m
DEBUG RAiDER:delay.py:146 Lats shape is (9,)
DEBUG RAiDER:delay.py:149 lat/lon box is 33.746000/36.795000/-118.312000/-114.892000 (SNWE)
DEBUG RAiDER:delay.py:170 Beginning line-of-sight calculation
DEBUG RAiDER:delay.py:40 Beginning delay calculation
DEBUG RAiDER:delay.py:41 Max integration height is 20000.0 m
DEBUG RAiDER:delay.py:42 Reference integration step is 15.0 m
DEBUG RAiDER:delay.py:71 Finished delay calculation
INFO RAiDER:delay.py:214 Finished writing data to /Users/fielding/tools/RAiDER/test/scenario_2/stations_with_Delays.csv
================================================= warnings summary =================================================
test/test_dem.py:77
/Users/fielding/tools/RAiDER/test/test_dem.py:77: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
test/test_scenario_1.py:22
/Users/fielding/tools/RAiDER/test/test_scenario_1.py:22: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
test/test_scenario_1.py:31
/Users/fielding/tools/RAiDER/test/test_scenario_1.py:31: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
test/test_scenario_1.py:40
/Users/fielding/tools/RAiDER/test/test_scenario_1.py:40: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
test/test_scenario_1.py:49
/Users/fielding/tools/RAiDER/test/test_scenario_1.py:49: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
test/test_scenario_1.py:58
/Users/fielding/tools/RAiDER/test/test_scenario_1.py:58: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
test/test_scenario_1.py:76
/Users/fielding/tools/RAiDER/test/test_scenario_1.py:76: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
test/test_scenario_2.py:19
/Users/fielding/tools/RAiDER/test/test_scenario_2.py:19: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
../../anaconda3/envs/RAiDER/lib/python3.7/site-packages/pydap/responses/das.py:14
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pydap/responses/das.py:14: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
from collections import Iterable
test/weather_model/test_downloaders.py:14
/Users/fielding/tools/RAiDER/test/weather_model/test_downloaders.py:14: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
test/weather_model/test_downloaders.py:25
/Users/fielding/tools/RAiDER/test/weather_model/test_downloaders.py:25: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
test/weather_model/test_downloaders.py:36
/Users/fielding/tools/RAiDER/test/weather_model/test_downloaders.py:36: PytestUnknownMarkWarning: Unknown pytest.mark.long - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.long
test/test_dem.py::test_getDEM
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/dem_stitcher/stitcher.py:125: UserWarning: /private/var/folders/92/tx_tbh3d05x_gpx6ydy5nmd94bbnb9/T/pytest-of-fielding/pytest-3/test_getDEM0 exists; data will be overwritten
warnings.warn(f'{dest_dir} exists; data will be overwritten')
test/test_dem.py: 64800 warnings
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/geopandas/_vectorized.py:142: DeprecationWarning: An exception was ignored while fetching the attribute `__array_interface__` from an object of type 'Polygon'. With the exception of `AttributeError` NumPy will always raise this exception in the future. Raise this deprecation warning to see the original exception. (Warning added NumPy 1.21)
aout[:] = out
test/test_scenario_1.py::test_tropo_delay_ERA5
test/test_scenario_1.py::test_tropo_delay_ERA5T
test/test_scenario_1.py::test_tropo_delay_MERRA2
test/test_scenario_1.py::test_tropo_delay_GMAO
test/weather_model/test_processWM.py::test_checkContainment
test/weather_model/test_processWM.py::test_checkContainment2
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/rasterio/__init__.py:220: NotGeoreferencedWarning: Dataset has no geotransform, gcps, or rpcs. The identity matrix be returned.
s = DatasetReader(path, driver=driver, sharing=sharing, **kwargs)
test/test_scenario_2.py::test_computeDelay
test/weather_model/test_downloaders.py::test_era5
test/weather_model/test_downloaders.py::test_era5t
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/urllib3/connectionpool.py:1020: InsecureRequestWarning: Unverified HTTPS request is being made to host 'cds.climate.copernicus.eu'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html#ssl-warnings
InsecureRequestWarning,
test/test_scenario_2.py::test_computeDelay
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/urllib3/connectionpool.py:1020: InsecureRequestWarning: Unverified HTTPS request is being made to host 'download-0000.copernicus-climate.eu'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html#ssl-warnings
InsecureRequestWarning,
test/weather_model/test_downloaders.py::test_era5
test/weather_model/test_downloaders.py::test_era5t
/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/urllib3/connectionpool.py:1020: InsecureRequestWarning: Unverified HTTPS request is being made to host 'download-0007.copernicus-climate.eu'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html#ssl-warnings
InsecureRequestWarning,
-- Docs: https://docs.pytest.org/en/stable/warnings.html
============================================= short test summary info ==============================================
FAILED test/test_scenario_1.py::test_tropo_delay_ERAI - AttributeError: 'ERAI' object has no attribute '_load_mod...
FAILED test/test_scenario_1.py::test_tropo_delay_GMAO - AssertionError: assert 0.012336466 < 0.01
FAILED test/test_scenario_2.py::test_computeDelay - ValueError: operands could not be broadcast together with sha...
============================ 3 failed, 252 passed, 3 skipped, 64825 warnings in 52.77s =============================
Describe the bug Test program
test/test_interpolator.pycrashes PythonTo Reproduce Steps to reproduce the behavior:
test/test_checkArgs.py ................................................ [ 18%] test/test_chunking.py ......... [ 22%] test/test_delay.py . [ 22%] test/test_dem.py ......... [ 25%] test/test_gnss.py .... [ 27%] test/test_hdf5_parallel.py s [ 27%] test/test_integration.py ... [ 29%] test/test_interpolator.py ...Fatal Python error: Aborted
Thread 0x00007000186d4000 (most recent call first): File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/threading.py", line 300 in wait File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/threading.py", line 552 in wait File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/tqdm/_monitor.py", line 60 in run File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/threading.py", line 926 in _bootstrap_inner File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/threading.py", line 890 in _bootstrap
Current thread 0x000000010da53dc0 (most recent call first): File "/Users/fielding/tools/RAiDER/test/test_interpolator.py", line 69 in test_interpolate_along_axis File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/python.py", line 183 in pytest_pyfunc_call File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_callers.py", line 39 in _multicall File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_manager.py", line 80 in _hookexec File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_hooks.py", line 265 in call File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/python.py", line 1641 in runtest File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/runner.py", line 162 in pytest_runtest_call File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_callers.py", line 39 in _multicall File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_manager.py", line 80 in _hookexec File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_hooks.py", line 265 in call File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/runner.py", line 255 in
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/runner.py", line 311 in from_call
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/runner.py", line 255 in call_runtest_hook
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/runner.py", line 215 in call_and_report
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/runner.py", line 126 in runtestprotocol
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/runner.py", line 109 in pytest_runtest_protocol
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_callers.py", line 39 in _multicall
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_manager.py", line 80 in _hookexec
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_hooks.py", line 265 in call
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/main.py", line 348 in pytest_runtestloop
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_callers.py", line 39 in _multicall
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_manager.py", line 80 in _hookexec
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_hooks.py", line 265 in call
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/main.py", line 323 in _main
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/main.py", line 269 in wrap_session
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/main.py", line 316 in pytest_cmdline_main
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_callers.py", line 39 in _multicall
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_manager.py", line 80 in _hookexec
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/pluggy/_hooks.py", line 265 in call
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/config/init.py", line 163 in main
File "/Users/fielding/anaconda3/envs/RAiDER/lib/python3.7/site-packages/_pytest/config/init.py", line 185 in console_main
File "/Users/fielding/anaconda3/envs/RAiDER/bin/py.test", line 11 in
Abort
commit bb43a9e2ea70838ccaed3ed03087c172810f1591 (HEAD -> dev, origin/dev, origin/HEAD) Merge: aabfd0c 4e2ebda Author: Jeremy Maurer maurer.jeremy@gmail.com Date: Tue Sep 21 11:05:21 2021 -0500