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dbekaert / RAiDER

Raytracing Atmospheric Delay Estimation for RADAR
Apache License 2.0
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[BUG] GMAO weather model issue with YML config file #376

Closed cmarshak closed 1 year ago

cmarshak commented 1 year ago

Describe the bug There seems to be an issue formatting the GMAO weather model.

To Reproduce

Navigate to an empty directory. Create a subdirectory called weather_files.

raiderDelay.py test.yml

with test.yml as:

look_dir: right

date_group:
  date_start:
  date_end:
  date_step:
  date_list:  [20200101]

time_group:
  time: "22:00:00"
  end_time:

weather_model: GMAO

aoi_group:
  lat_file:
  lon_file:
  height_file_rdr:
  station_file:
  bounding_box: 53.0 56.0 -4.0 -1.0
  utm_zone:
  grid_x:
  grid_y:

height_group:
  dem:
  use_dem_latlon: False
  height_file_rdr:
  height_levels: "-500 0 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 6000 6500 7000 7500 8000 8500 9000"

los_group:
  ray_trace: False  # Use projected slant delay by default
  zref: # Integration height. Only used in raytracing.
  los_file:
  los_convention: isce  # can be "isce" or "hyp3", see *** for details
  los_cube:
  orbit_file:

runtime_group:
  verbose: True
  raster_format: nc # Can be any rasterio-compatible format
  output_directory: '.'
  weather_model_directory: weather_files
  cube_spacing_in_m: 2000.

The error is:

(RAiDER) --- bekaert-team/raider-example » raiderDelay.py test.yml
Run routine processing with raiderDelay.py on steps: ['load_weather_model', 'calculate_delays']
Remaining steps: ['calculate_delays']
--------------------------------------------------
Weather model GMAO is available from 2014-02-20 00:00:00-Present
WARNING: Rounded given hour from  22 to 21
/Users/cmarshak/opt/anaconda3/envs/RAiDER/lib/python3.11/site-packages/pyproj/crs/crs.py:1286: UserWarning: You will likely lose important projection information when converting to a PROJ string from another format. See: https://proj.org/faq.html#what-is-the-best-format-for-describing-coordinate-reference-systems
  proj = self._crs.to_proj4(version=version)
ERROR: Unable to save weathermodel to file
Traceback (most recent call last):
  File "/Users/cmarshak/bekaert-team/RAiDER/tools/RAiDER/models/gmao.py", line 145, in _fetch
    writeWeatherVars2NETCDF4(self, lats, lons, h, q, p, t, outName=out)
  File "/Users/cmarshak/bekaert-team/RAiDER/tools/RAiDER/utilFcns.py", line 826, in writeWeatherVars2NETCDF4
    nc_outfile = write2NETCDF4core(nc_outfile, dimension_dict, dataset_dict, tran, mapping_name='WGS84')
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/cmarshak/bekaert-team/RAiDER/tools/RAiDER/utilFcns.py", line 906, in write2NETCDF4core
    dataset_dict[data]['dataset'][ndmask] = FillValue
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^
TypeError: only integer scalar arrays can be converted to a scalar index
Traceback (most recent call last):
  File "/Users/cmarshak/opt/anaconda3/envs/RAiDER/bin/raiderDelay.py", line 8, in <module>
    sys.exit(main())
             ^^^^^^
  File "/Users/cmarshak/bekaert-team/RAiDER/tools/RAiDER/runProgram.py", line 33, in main
    (_, _) = tropo_delay(t, w, f, params)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/cmarshak/bekaert-team/RAiDER/tools/RAiDER/delay.py", line 90, in tropo_delay
    weather_model_file = prepareWeatherModel(
                         ^^^^^^^^^^^^^^^^^^^^
  File "/Users/cmarshak/bekaert-team/RAiDER/tools/RAiDER/processWM.py", line 77, in prepareWeatherModel
    f = weather_model.load(
        ^^^^^^^^^^^^^^^^^^^
  File "/Users/cmarshak/bekaert-team/RAiDER/tools/RAiDER/models/weatherModel.py", line 201, in load
    self.load_weather(*args, **kwargs)
  File "/Users/cmarshak/bekaert-team/RAiDER/tools/RAiDER/models/gmao.py", line 158, in load_weather
    self._load_model_level(f)
  File "/Users/cmarshak/bekaert-team/RAiDER/tools/RAiDER/models/gmao.py", line 170, in _load_model_level
    h = np.array(f.variables['H'][:])
                 ~~~~~~~~~~~^^^^^
KeyError: 'H'

Expected behavior Not sure

cmarshak commented 1 year ago 
(RAiDER) --- bekaert-team/raider-example » conda info             1 ↵

     active environment : RAiDER
    active env location : /Users/cmarshak/opt/anaconda3/envs/RAiDER
            shell level : 2
       user config file : /Users/cmarshak/.condarc
 populated config files :
          conda version : 4.10.3
    conda-build version : 3.20.5
         python version : 3.8.5.final.0
       virtual packages : __osx=10.16=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /Users/cmarshak/opt/anaconda3  (writable)
      conda av data dir : /Users/cmarshak/opt/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/osx-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/osx-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /Users/cmarshak/opt/anaconda3/pkgs
                          /Users/cmarshak/.conda/pkgs
       envs directories : /Users/cmarshak/opt/anaconda3/envs
                          /Users/cmarshak/.conda/envs
               platform : osx-64
             user-agent : conda/4.10.3 requests/2.28.1 CPython/3.8.5 Darwin/21.6.0 OSX/10.16
                UID:GID : 29783585:20
             netrc file : /Users/cmarshak/.netrc
           offline mode : False

and

# packages in environment at /Users/cmarshak/opt/anaconda3/envs/RAiDER:
#
# Name                    Version                   Build  Channel
affine                    2.3.1              pyhd8ed1ab_0    conda-forge
anyio                     3.6.2              pyhd8ed1ab_0    conda-forge
appnope                   0.1.3              pyhd8ed1ab_0    conda-forge
argon2-cffi               21.3.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0                   pypi_0    pypi
asttokens                 2.1.0              pyhd8ed1ab_0    conda-forge
attrs                     22.1.0             pyh71513ae_1    conda-forge
autopep8                  2.0.0              pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backoff                   2.2.1              pyhd8ed1ab_0    conda-forge
backports                 1.1                pyhd3eb1b0_0
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.11.1             pyha770c72_0    conda-forge
bleach                    5.0.1              pyhd8ed1ab_0    conda-forge
blosc                     1.21.1               h97e831e_3    conda-forge
bokeh                     2.4.3              pyhd8ed1ab_3    conda-forge
boost-cpp                 1.78.0               h8b082ac_1    conda-forge
boto3                     1.26.3             pyhd8ed1ab_0    conda-forge
botocore                  1.29.3             pyhd8ed1ab_0    conda-forge
branca                    0.6.0              pyhd8ed1ab_0    conda-forge
brotli                    1.0.9                hb7f2c08_8    conda-forge
brotli-bin                1.0.9                hb7f2c08_8    conda-forge
brotlipy                  0.7.0                    pypi_0    pypi
bzip2                     1.0.8                hc929b4f_4    conda-forge
c-ares                    1.18.1               h0d85af4_0    conda-forge
c-compiler                1.5.1                hbf74d83_0    conda-forge
ca-certificates           2022.10.11           hecd8cb5_0
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cairo                     1.16.0            h904041c_1014    conda-forge
cctools                   973.0.1             h76f1dac_10    conda-forge
cctools_osx-64            973.0.1             h2b95895_10    conda-forge
cdsapi                    0.5.1              pyhd8ed1ab_0    conda-forge
certifi                   2022.9.24          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1                   pypi_0    pypi
cfgrib                    0.9.10.2           pyhd8ed1ab_0    conda-forge
cfitsio                   4.1.0                h2c97ad1_0    conda-forge
cftime                    1.6.2                    pypi_0    pypi
charset-normalizer        2.1.1              pyhd8ed1ab_0    conda-forge
clang                     14.0.4               h694c41f_0    conda-forge
clang-14                  14.0.4          default_h55ffa42_0    conda-forge
clang_osx-64              14.0.4               h3a95cd4_2    conda-forge
clangxx                   14.0.4          default_h55ffa42_0    conda-forge
clangxx_osx-64            14.0.4               he1dbc44_2    conda-forge
click                     8.1.3                    pypi_0    pypi
click-plugins             1.1.1                      py_0    conda-forge
cligj                     0.7.2              pyhd8ed1ab_1    conda-forge
cloudpickle               2.2.0              pyhd8ed1ab_0    conda-forge
cmake                     3.24.3               h4032537_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
compiler-rt               14.0.4               h7fcd477_0    conda-forge
compiler-rt_osx-64        14.0.4               h6df654d_0    conda-forge
contourpy                 1.0.6                    pypi_0    pypi
coverage                  6.5.0                    pypi_0    pypi
cryptography              38.0.3                   pypi_0    pypi
curl                      7.86.0               h57eb407_1    conda-forge
cxx-compiler              1.5.1                hb8565cd_0    conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
cython                    0.29.32                  pypi_0    pypi
cytoolz                   0.12.0                   pypi_0    pypi
dask                      2022.6.1           pyhd8ed1ab_0    conda-forge
dask-core                 2022.6.1           pyhd8ed1ab_0    conda-forge
debugpy                   1.6.3                    pypi_0    pypi
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
dem_stitcher              2.3.0              pyhd8ed1ab_0    conda-forge
distributed               2022.6.1           pyhd8ed1ab_0    conda-forge
docopt                    0.6.2                      py_1    conda-forge
eccodes                   1.4.2                    pypi_0    pypi
ecmwf-api-client          1.6.3              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
executing                 1.2.0              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hf0c8a7f_0    conda-forge
fftw                      3.3.10          nompi_h4fa670e_105    conda-forge
findlibs                  0.0.2              pyhd8ed1ab_0    conda-forge
fiona                     1.8.22                   pypi_0    pypi
flit-core                 3.8.0              pyhd8ed1ab_0    conda-forge
folium                    0.13.0             pyhd8ed1ab_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.1               h5bb23bf_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.38.0                   pypi_0    pypi
freetype                  2.12.1               h3f81eb7_0    conda-forge
freexl                    1.0.6                hb7f2c08_1    conda-forge
fsspec                    2022.10.0          pyhd8ed1ab_0    conda-forge
gdal                      3.5.3                    pypi_0    pypi
geopandas                 0.12.1             pyhd8ed1ab_1    conda-forge
geopandas-base            0.12.1             pyha770c72_1    conda-forge
geos                      3.11.0               hb486fe8_0    conda-forge
geotiff                   1.7.1                he29fd1c_4    conda-forge
gettext                   0.21.1               h8a4c099_0    conda-forge
giflib                    5.2.1                hbcb3906_2    conda-forge
glib                      2.74.1               hbc0c0cd_1    conda-forge
glib-tools                2.74.1               hbc0c0cd_1    conda-forge
gst-plugins-base          1.21.1               h37e1711_1    conda-forge
gstreamer                 1.21.1               h1d18e73_1    conda-forge
h5py                      3.7.0                    pypi_0    pypi
hdf4                      4.2.15               h7aa5921_5    conda-forge
hdf5                      1.12.2          nompi_hc782337_100    conda-forge
heapdict                  1.0.1                      py_0    conda-forge
icu                       70.1                 h96cf925_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
importlib-metadata        5.0.0              pyha770c72_1    conda-forge
importlib_metadata        5.0.0                hd8ed1ab_1    conda-forge
importlib_resources       5.10.0             pyhd8ed1ab_0    conda-forge
iniconfig                 1.1.1              pyh9f0ad1d_0    conda-forge
ipykernel                 6.17.0             pyh736e0ef_0    conda-forge
ipython                   8.6.0              pyhd1c38e8_1    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                8.0.2              pyhd8ed1ab_1    conda-forge
isce3                     0.8.0           py311h55af899_2    conda-forge
jasper                    2.0.33               h013e400_0    conda-forge
jedi                      0.18.1             pyhd8ed1ab_2    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
jmespath                  1.0.1              pyhd8ed1ab_0    conda-forge
joblib                    1.2.0              pyhd8ed1ab_0    conda-forge
jpeg                      9e                   hac89ed1_2    conda-forge
json-c                    0.16                 h01d06f9_0    conda-forge
jsonschema                4.17.0             pyhd8ed1ab_0    conda-forge
jupyter                   1.0.0                      py_2    conda-forge
jupyter-core              4.11.2                   pypi_0    pypi
jupyter_client            7.4.4              pyhd8ed1ab_0    conda-forge
jupyter_console           6.4.4              pyhd8ed1ab_0    conda-forge
jupyter_core              4.11.2          py311h6eed73b_0    conda-forge
jupyter_server            1.23.0             pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        3.0.3              pyhd8ed1ab_0    conda-forge
kealib                    1.4.15               h51f5cc1_1    conda-forge
kernel-headers_linux-64   2.6.32              he073ed8_15    conda-forge
kiwisolver                1.4.4                    pypi_0    pypi
krb5                      1.19.3               hb49756b_0    conda-forge
lcms2                     2.14                 h90f4b2a_0    conda-forge
ld64                      609                 hc6ad406_10    conda-forge
ld64_osx-64               609                 h1e06c2b_10    conda-forge
lerc                      4.0.0                hb486fe8_0    conda-forge
libaec                    1.0.6                he49afe7_0    conda-forge
libblas                   3.9.0           16_osx64_openblas    conda-forge
libbrotlicommon           1.0.9                hb7f2c08_8    conda-forge
libbrotlidec              1.0.9                hb7f2c08_8    conda-forge
libbrotlienc              1.0.9                hb7f2c08_8    conda-forge
libcblas                  3.9.0           16_osx64_openblas    conda-forge
libclang                  15.0.4          default_h20dc2f0_0    conda-forge
libclang-cpp14            14.0.4          default_h55ffa42_0    conda-forge
libclang13                15.0.4          default_hc4b5f92_0    conda-forge
libcurl                   7.86.0               h57eb407_1    conda-forge
libcxx                    14.0.6               hce7ea42_0    conda-forge
libdap4                   3.20.6               h3e144a0_2    conda-forge
libdeflate                1.14                 hb7f2c08_0    conda-forge
libedit                   3.1.20191231         hed1e85f_2    conda-forge
libev                     4.33                 haf1e3a3_1    conda-forge
libffi                    3.4.2                h0d85af4_5    conda-forge
libgdal                   3.5.3                h1951153_1    conda-forge
libgfortran               5.0.0           11_3_0_h97931a8_26    conda-forge
libgfortran5              11.3.0              h082f757_26    conda-forge
libglib                   2.74.1               h4c723e1_1    conda-forge
libiconv                  1.17                 hac89ed1_0    conda-forge
libkml                    1.3.0             haeb80ef_1015    conda-forge
liblapack                 3.9.0           16_osx64_openblas    conda-forge
libllvm14                 14.0.4               h41df66c_0    conda-forge
libllvm15                 15.0.4               h7001e86_0    conda-forge
libnetcdf                 4.8.1           nompi_hc61b76e_106    conda-forge
libnghttp2                1.47.0               h7cbc4dc_1    conda-forge
libogg                    1.3.5                hca72f7f_1
libopenblas               0.3.21          openmp_h429af6e_3    conda-forge
libopus                   1.3.1                hc929b4f_1    conda-forge
libpng                    1.6.38               ha978bb4_0    conda-forge
libpq                     14.5                 h50fae06_1    conda-forge
librttopo                 1.1.0               he07d8f5_11    conda-forge
libsodium                 1.0.18               hbcb3906_1    conda-forge
libspatialindex           1.9.3                he49afe7_4    conda-forge
libspatialite             5.0.1               h778c766_21    conda-forge
libsqlite                 3.39.4               ha978bb4_0    conda-forge
libssh2                   1.10.0               h7535e13_3    conda-forge
libtiff                   4.4.0                hdb44e8a_4    conda-forge
libuv                     1.44.2               hac89ed1_0    conda-forge
libvorbis                 1.3.7                h046ec9c_0    conda-forge
libwebp-base              1.2.4                h775f41a_0    conda-forge
libxcb                    1.13              h0d85af4_1004    conda-forge
libxml2                   2.10.3               hb9e07b5_0    conda-forge
libxslt                   1.1.37               h5d22bc9_0    conda-forge
libzip                    1.9.2                h3ad4413_1    conda-forge
libzlib                   1.2.13               hfd90126_4    conda-forge
llvm-openmp               14.0.4               ha654fa7_0    conda-forge
llvm-tools                14.0.4               h41df66c_0    conda-forge
locket                    1.0.0              pyhd8ed1ab_0    conda-forge
lxml                      4.9.1                    pypi_0    pypi
lz4                       4.0.2                    pypi_0    pypi
lz4-c                     1.9.3                he49afe7_1    conda-forge
mapclassify               2.4.3              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.1                    pypi_0    pypi
matplotlib                3.6.2                    pypi_0    pypi
matplotlib-base           3.6.2           py311h2bf763f_0    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mistune                   2.0.4              pyhd8ed1ab_0    conda-forge
msgpack                   1.0.4                    pypi_0    pypi
msgpack-python            1.0.4           py311hd2070f0_1    conda-forge
munch                     2.5.0                      py_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mysql-common              8.0.31               h7ebae80_0    conda-forge
mysql-libs                8.0.31               hc37e033_0    conda-forge
nbclassic                 0.4.8              pyhd8ed1ab_0    conda-forge
nbclient                  0.7.0              pyhd8ed1ab_0    conda-forge
nbconvert                 7.2.3              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.2.3              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.2.3              pyhd8ed1ab_0    conda-forge
nbformat                  5.7.0              pyhd8ed1ab_0    conda-forge
ncurses                   6.3                  h96cf925_1    conda-forge
nest-asyncio              1.5.6              pyhd8ed1ab_0    conda-forge
netcdf4                   1.6.1                    pypi_0    pypi
networkx                  2.8.8              pyhd8ed1ab_0    conda-forge
notebook                  6.5.2              pyha770c72_1    conda-forge
notebook-shim             0.2.2              pyhd8ed1ab_0    conda-forge
nspr                      4.32                 hcd9eead_1    conda-forge
nss                       3.78                 ha8197d3_0    conda-forge
numpy                     1.23.4                   pypi_0    pypi
openjpeg                  2.5.0                h5d0d7b0_1    conda-forge
openssl                   1.1.1s               hfd90126_0    conda-forge
packaging                 21.3               pyhd8ed1ab_0    conda-forge
pandas                    1.5.1                    pypi_0    pypi
pandoc                    2.19.2               h694c41f_1    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
partd                     1.3.0              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 he49afe7_0    conda-forge
pcre2                     10.40                h1c4e4bc_0    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    9.2.0                    pypi_0    pypi
pip                       22.3.1             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               hbcb3906_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_0    conda-forge
pluggy                    1.0.0                    pypi_0    pypi
ply                       3.11                       py_1    conda-forge
poppler                   22.11.0              hf2ff1a1_0    conda-forge
poppler-data              0.4.11               hd8ed1ab_0    conda-forge
postgresql                14.5                 h7bc2cb3_1    conda-forge
progressbar               2.5                        py_0    conda-forge
proj                      9.1.0                hcbd9701_0    conda-forge
prometheus_client         0.15.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.32             pyha770c72_0    conda-forge
prompt_toolkit            3.0.32               hd8ed1ab_0    conda-forge
psutil                    5.9.3                    pypi_0    pypi
pthread-stubs             0.4               hc929b4f_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pycodestyle               2.9.1              pyhd8ed1ab_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pydap                     3.3.0              pyhd8ed1ab_0    conda-forge
pygments                  2.13.0             pyhd8ed1ab_0    conda-forge
pyopenssl                 22.1.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pyproj                    3.4.0                    pypi_0    pypi
pyqt                      5.15.7          py311h8771221_2    conda-forge
pyqt5                     5.15.7                   pypi_0    pypi
pyqt5-sip                 12.11.0                  pypi_0    pypi
pyre                      1.11.2          py311h50445f5_3    conda-forge
pyrsistent                0.19.2                   pypi_0    pypi
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pytest                    7.2.0                    pypi_0    pypi
pytest-console-scripts    1.3.1              pyhd8ed1ab_0    conda-forge
pytest-cov                4.0.0              pyhd8ed1ab_0    conda-forge
pytest-timeout            2.1.0              pyhd8ed1ab_0    conda-forge
python                    3.11.0          ha621ccb_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-eccodes            1.4.2           py311hd5badaa_1    conda-forge
python-fastjsonschema     2.16.2             pyhd8ed1ab_0    conda-forge
python_abi                3.11                    2_cp311    conda-forge
pytz                      2022.6             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0                      pypi_0    pypi
pyzmq                     24.0.1                   pypi_0    pypi
qt-main                   5.15.6               he0d2461_1    conda-forge
qtconsole                 5.4.0              pyhd8ed1ab_0    conda-forge
qtconsole-base            5.4.0              pyha770c72_0    conda-forge
qtpy                      2.2.1              pyhd8ed1ab_0    conda-forge
raider                    0.1.0                    pypi_0    pypi
rasterio                  1.3.3                    pypi_0    pypi
readline                  8.1.2                h3899abd_0    conda-forge
requests                  2.28.1             pyhd8ed1ab_1    conda-forge
rhash                     1.4.3                hac89ed1_0    conda-forge
rtree                     1.0.1                    pypi_0    pypi
ruamel-yaml               0.17.21                  pypi_0    pypi
ruamel-yaml-clib          0.2.7                    pypi_0    pypi
ruamel.yaml               0.17.21         py311h5547dcb_2    conda-forge
ruamel.yaml.clib          0.2.7           py311h5547dcb_0    conda-forge
s3transfer                0.6.0              pyhd8ed1ab_0    conda-forge
scikit-learn              1.1.3                    pypi_0    pypi
scipy                     1.9.3                    pypi_0    pypi
send2trash                1.8.0              pyhd8ed1ab_0    conda-forge
setuptools                65.5.1             pyhd8ed1ab_0    conda-forge
shapely                   1.8.5.post1              pypi_0    pypi
sigtool                   0.1.3                h57ddcff_0    conda-forge
sip                       6.7.4                    pypi_0    pypi
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.1.9                h225ccf5_2    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
snuggs                    1.4.7                      py_0    conda-forge
sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.2.post1        pyhd8ed1ab_0    conda-forge
sqlite                    3.39.4               h9ae0607_0    conda-forge
stack_data                0.6.0              pyhd8ed1ab_0    conda-forge
sysroot_linux-64          2.12                he073ed8_15    conda-forge
tapi                      1100.0.11            h879752b_0    conda-forge
tblib                     1.7.0              pyhd8ed1ab_0    conda-forge
terminado                 0.17.0             pyhd1c38e8_0    conda-forge
threadpoolctl             3.1.0              pyh8a188c0_0    conda-forge
tiledb                    2.11.3               h3b7b576_1    conda-forge
tinycss2                  1.2.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h5dbffcc_0    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
tornado                   6.2                      pypi_0    pypi
tqdm                      4.64.1             pyhd8ed1ab_0    conda-forge
traitlets                 5.5.0              pyhd8ed1ab_0    conda-forge
typing_extensions         4.4.0              pyha770c72_0    conda-forge
tzcode                    2022f                hb7f2c08_0    conda-forge
tzdata                    2022f                h191b570_0    conda-forge
urllib3                   1.26.11            pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
webob                     1.8.7              pyhd8ed1ab_0    conda-forge
websocket-client          1.4.2              pyhd8ed1ab_0    conda-forge
wheel                     0.38.2             pyhd8ed1ab_0    conda-forge
widgetsnbextension        4.0.3              pyhd8ed1ab_0    conda-forge
xarray                    2022.11.0          pyhd8ed1ab_0    conda-forge
xerces-c                  3.2.4                h2007e90_1    conda-forge
xorg-libxau               1.0.9                h35c211d_0    conda-forge
xorg-libxdmcp             1.1.3                h35c211d_0    conda-forge
xyzservices               2022.9.0           pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h775f41a_0    conda-forge
yamale                    4.0.4              pyh6c4a22f_0    conda-forge
yaml                      0.2.5                h0d85af4_2    conda-forge
zeromq                    4.3.4                he49afe7_1    conda-forge
zict                      2.2.0              pyhd8ed1ab_0    conda-forge
zipp                      3.10.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hfd90126_4    conda-forge
zstd                      1.5.2                hfa58983_4    conda-forge
cmarshak commented 1 year ago

Also note the warning WARNING: Rounded given hour from 22 to 21.

cmarshak commented 1 year ago

Per #377 - I updated the yml file to include the output projection and used the branch feat/cube, but the same error persisted. I am including the updated yml file here for posterity.

look_dir: right

date_group:
  date_start:
  date_end:
  date_step:
  date_list:  [20200101]

time_group:
  time: "23:00:00"
  end_time:

weather_model: GMAO

aoi_group:
  lat_file:
  lon_file:
  height_file_rdr:
  station_file:
  bounding_box: 53.0 56.0 -4.0 -1.0
  utm_zone:
  grid_x:
  grid_y:

height_group:
  dem:
  use_dem_latlon: False
  height_file_rdr:
  height_levels: "-500 0 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 6000 6500 7000 7500 8000 8500 9000"

los_group:
  ray_trace: False  # Use projected slant delay by default
  zref: # Integration height. Only used in raytracing.
  los_file:
  los_convention: isce  # can be "isce" or "hyp3", see *** for details
  los_cube:
  orbit_file:

runtime_group:
  verbose: True
  raster_format: nc # Can be any rasterio-compatible format
  output_directory: .
  weather_model_directory: weather_files
  cube_spacing_in_m: 2000.
  output_projection:  4326