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dbolser / PGSC

Code for the Potato Genome Sequencing Consortium, but hopefully generic enough.
http://www.potatogenome.net/
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Help: Tallymer support #2

Open taranglute opened 6 years ago

taranglute commented 6 years ago

I am not sure about below details can you please confirm,

Data structure and Sorting Algo: Enhanced suffix arrays/Counting using the lcp-interval tree Approach: In-memory The limit of k-size : Arbitrary large k-mer lengths. Supports online k-mer frequency retrieval : Yes Supports compressed file processing : No

dbolser commented 6 years ago

Sorry, these details should be answered by the tallymer author (sorry I can't help).