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dbpedia / virtuoso-sparql-endpoint-quickstart

creates a docker image with Virtuoso preloaded with the latest DBpedia dataset
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store_1 | /run.sh: line 40: 13 Segmentation fault (core dumped) #12

Closed kanihal closed 4 years ago

kanihal commented 6 years ago

Getting this error on running step2 of reusing downloads docker run -ti -v /var/run/docker.sock:/var/run/docker.sock:z -v /opt/dbpedia/data/en:/dbpedia-download:z --name dld-dbpedia aksw/dld-dist-dbpedia run-dld


store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x8d6ebd]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x8d6f38]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x47a470]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x47eb4f]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x51cc2f]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x8223dd]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x827011]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x630003]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x630d0c]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x5c9d57]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x5e3830]
store_1 | 12:30:22 /usr/bin/virtuoso-t(insert_node_input+0x6d) [0x5ca0ad]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x5a0769]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x5a0866]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x59f542]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x5a0051]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x5c7614]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x5d1f4a]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x65a2de]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x65b7e2]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x599a28]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x5a201f]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x5c76ca]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x5d1f4a]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x41602f]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x416567]
store_1 | 12:30:22 /usr/bin/virtuoso-t() [0x8e1a83]
store_1 | 12:30:22 /lib/x86_64-linux-gnu/libpthread.so.0(+0x80a4) [0x7f593135b0a4]
store_1 | 12:30:22 /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d) [0x7f593097004d]
store_1 | 12:30:22 GPF: disk.c:1047 buffer not in the hash of the would be space of residence
store_1 | GPF: disk.c:1047 buffer not in the hash of the would be space of residence
store_1 | /run.sh: line 40:    13 Segmentation fault      (core dumped) ${VOSCMD} +configfile ${CONFIG} +foreground
load_1  | [ERROR] running the these commands in virtuoso:
load_1  | log_enable(2);
load_1  | checkpoint_interval(-1);
load_1  | set isolation = 'uncommitted';
load_1  | rdf_loader_run();
load_1  | log_enable(1);
load_1  | checkpoint_interval(60);
load_1  | error code: 2
load_1  | output:
load_1  | Connected to OpenLink Virtuoso
load_1  | Driver: 06.01.3127 OpenLink Virtuoso ODBC Driver
load_1  | OpenLink Interactive SQL (Virtuoso), version 0.9849b.
load_1  | Type HELP; for help and EXIT; to exit.
load_1  | SQL> 
load_1  | Done. -- 0 msec.
load_1  | SQL> 
load_1  | Done. -- 0 msec.
load_1  | SQL> 
load_1  | Done. -- 0 msec.
load_1  | SQL> 
load_1  | *** Error 08S01: [Virtuoso Driver]CL065: Lost connection to server
load_1  | at line 4 of Top-Level:
load_1  | rdf_loader_run()
load_1  | [INFO] making checkpoint...
load_1  | [ERROR] running the these commands in virtuoso:
load_1  | checkpoint;
load_1  | error code: 3
load_1  | output:
load_1  | 
load_1  | *** Error S2801: [Virtuoso Driver]CL033: Connect failed to store:1111 = store:1111.
load_1  | at line 0 of Top-Level:
load_1  | [INFO] re-activating auto-indexing
load_1  | [ERROR] running the these commands in virtuoso:
load_1  | DB.DBA.RDF_OBJ_FT_RULE_ADD (null, null, 'All');
load_1  | error code: 3
load_1  | output:
load_1  | 
load_1  | *** Error S2801: [Virtuoso Driver]CL033: Connect failed to store:1111 = store:1111.
load_1  | at line 0 of Top-Level:
load_1  | [ERROR] running the these commands in virtuoso:
load_1  | DB.DBA.VT_INC_INDEX_DB_DBA_RDF_OBJ ();
load_1  | error code: 3
load_1  | output:
load_1  | 
load_1  | *** Error S2801: [Virtuoso Driver]CL033: Connect failed to store:1111 = store:1111.
load_1  | at line 0 of Top-Level:
load_1  | [INFO] making checkpoint...
load_1  | [ERROR] running the these commands in virtuoso:
load_1  | checkpoint;
load_1  | error code: 3
load_1  | output:
load_1  | 
load_1  | *** Error S2801: [Virtuoso Driver]CL033: Connect failed to store:1111 = store:1111.
load_1  | at line 0 of Top-Level:
load_1  | [INFO] update/filling of geo index
load_1  | [ERROR] running the these commands in virtuoso:
load_1  | rdf_geo_fill();
load_1  | error code: 3
load_1  | output:
load_1  | 
load_1  | *** Error S2801: [Virtuoso Driver]CL033: Connect failed to store:1111 = store:1111.
load_1  | at line 0 of Top-Level:
load_1  | [INFO] making checkpoint...
load_1  | [ERROR] running the these commands in virtuoso:
load_1  | checkpoint;
load_1  | error code: 3
load_1  | output:
load_1  | 
load_1  | *** Error S2801: [Virtuoso Driver]CL033: Connect failed to store:1111 = store:1111.
load_1  | at line 0 of Top-Level:
load_1  | [INFO] bulk load done; terminating loader
dlddbpediawd_store_1 exited with code 139
dlddbpediawd_load_1 exited with code 0

Any idea, How to go about solving this?

holycrab13 commented 4 years ago

Repo structure changed, issue is out of date. Please reopen if something similar occurs.