Write script to parse NCBI taxonomy into a useful file - Githubissues

dcdanko / MD2

MicrobeDirectory 2.0

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Write script to parse NCBI taxonomy into a useful file #1

Closed dcdanko closed 5 years ago

dcdanko commented 5 years ago

Write a script that turns the NCBI taxonomy into a table with three columns

Taxa ID
Scientific Name
Taxonomic Rank

dcdanko commented 5 years ago

This file contains a useful parser for NCBI taxa https://github.com/dcdanko/capalyzer/blob/master/capalyzer/packet_parser/taxa_tree.py

Chandrima-04 commented 5 years ago

Table created for #1 https://github.com/dcdanko/MD2/blob/master/tables/all_species_rank_NCBI.csv.gz