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dcgerard / updog

Flexible Genotyping of Polyploids using Next Generation Sequencing Data
https://dcgerard.github.io/updog/
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How to Deal With The VCF File of AD #33

Open jiangzuo007 opened 5 months ago

jiangzuo007 commented 5 months ago

When I use Updog and read the corresponding information from VCF, my VCF file is v4.2 without RA field, and it replaces AD, but AD includes Reference allele and Alternative allele. How can I correctly use this reference allele?

Thanks