dchaley / deepcell-imaging

Tools & guidance to scale DeepCell imaging on Google Cloud Batch
8 stars 2 forks source link

Default batch size 16; parameter to skip postprocessing (results unintelligible) #173

Closed dchaley closed 6 months ago

dchaley commented 6 months ago

Update the default batch size to 16 in our benchmarking as that's the one we use most commonly.

Importantly, add the skip_postprocessing parameter which creates a custom Mesmer application with a no-op post-processing step. Note that this makes the results unintelligible. It's reflected in the results with a different deepcell version: _nopost.

Paired with @WeihaoGe1009

Fixes #172