dchaley / deepcell-imaging

Tools & guidance to scale DeepCell imaging on Google Cloud Batch
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Create entry points for preprocess, infer, and postprocess #222

Closed dchaley closed 1 month ago

dchaley commented 1 month ago

Thus far we've been running DeepCell via the benchmark.py script which does all three steps in one.

We need separate entry points for each step. This means doing some surgery on the DeepCell library.

This task involves:

We'll set up the workflow in another step

dchaley commented 1 month ago

PR deepcell-imaging#233 performed a prerequisite refactor: pull instance methods into independent functions.

Now we need to set up actual entry points to call these. This will require architecting the input/output interface of these steps. 🤔

dchaley commented 1 month ago

See #234 for entrypoint interfaces.