dchaley / deepcell-imaging

Tools & guidance to scale DeepCell imaging on Google Cloud Batch
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Add script to submit a batch job #223

Closed dchaley closed 4 months ago

dchaley commented 4 months ago

Submitting a job by hand requires some busy-work: coming up with a job id and updating the output path to use that id.

This script automates this process by generating a job id, writing the appropriate json file, and submitting it to Batch via gcloud.

Fixes #219

Paired with @WeihaoGe1009