dchaley / deepcell-imaging

Tools & guidance to scale DeepCell imaging on Google Cloud Batch
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Fetch input image size from remote file (don't hardcode) #247

Closed dchaley closed 3 weeks ago

dchaley commented 3 weeks ago

Fixes issue #240. See issue for more context. TLDR: we need to provide the input size to postprocessing to resize back to original if necessary. We were passing in hard-coded 512x512. Now we fetch the numpy headers and use those to set the size.

Paired with @WeihaoGe1009