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dchaley / deepcell-imaging

Tools & guidance to scale DeepCell imaging on Google Cloud Batch
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Output predictions tiff in benchmark script #263

Closed dchaley closed 1 week ago

dchaley commented 1 week ago

This adds flags to output the predictions as a TIFF file. If outputting as a TIFF, provides the additional option to squeeze the output (ie remove all axes of length 1).

See also #253 for ongoing discussion.

dchaley commented 1 week ago

Per discussion in #253 going to merge this so Brenna can try the format in her pipeline.