dchaley / deepcell-imaging

Tools & guidance to scale DeepCell imaging on Google Cloud Batch
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Output tiffs as int32 in benchmark + multistep #274

Closed dchaley closed 2 months ago

dchaley commented 2 months ago

This includes an API change: we now return the postprocessed data without the batch dimension. This normalizes it across the app (where we work on 1 image at a time).

Also add a tiff output to multi-step (todo: parameterize filename).

Paired with @WeihaoGe1009 @bnovotny

Related to #253 (but not quite done yet: need to customize the tiff output name)