Closed dchaley closed 1 month ago
This updates the run-qupath-job batch job launcher to create a list of tasks, one for each pair of TIFF+npz files.
The tasks then run DeepCell and put the prediction mask TIFFs into the SEGMASK directory. This makes the dataset ready for QuPath processing.
Fixes #292.
This updates the run-qupath-job batch job launcher to create a list of tasks, one for each pair of TIFF+npz files.
The tasks then run DeepCell and put the prediction mask TIFFs into the SEGMASK directory. This makes the dataset ready for QuPath processing.
Fixes #292.