We can't use native Batch job dependencies in the target environment. So we need another way to kick-off the QuPath job once DeepCell finishes segmentation.
Let's create a new runnable script that runs as the last task in the existing qupath pipeline. It will do nothing for $BATCH_TASK_INDEX != 0. But for the 0th task, it does the following.
We can't use native Batch job dependencies in the target environment. So we need another way to kick-off the QuPath job once DeepCell finishes segmentation.
Let's create a new runnable script that runs as the last task in the existing qupath pipeline. It will do nothing for
$BATCH_TASK_INDEX != 0. But for the 0th task, it does the following.