dchaley / deepcell-imaging

Tools & guidance to scale DeepCell imaging on Google Cloud Batch
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Output both whole-cell & nuclear masks #324

Closed dchaley closed 3 months ago

dchaley commented 3 months ago

This makes the 2 tiff output paths explicit parameters to postprocess, and sets up the jobs to output both.

We also deleted an older job runner, that we need to recreate using the new approaches in segment-and-measure.

Fixes #298

Paired with @WeihaoGe1009