Closed dchaley closed 2 months ago
We used to structure files like this:
gs://some/path/image-name/input_channels.npz
therefore the input file name was the directory containing the input channels.
However, that's no longer the case with the qupath organization, where we have structured like this:
📁 qupath_dataset |- OMETIFF |- mesmer_1.tiff |- NPZ_INTERMEDIATE |- mesmer_1.npz
In this case, the file itself is the name, not the directory.
Possible fix? Rename all sample input_channels.npz files to their actual name, and use the filename as the name.
We used to structure files like this:
gs://some/path/image-name/input_channels.npztherefore the input file name was the directory containing the input channels.
However, that's no longer the case with the qupath organization, where we have structured like this:
In this case, the file itself is the name, not the directory.
Possible fix? Rename all sample input_channels.npz files to their actual name, and use the filename as the name.