dchaley / deepcell-imaging

Tools & guidance to scale DeepCell imaging on Google Cloud Batch
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Add h_maxima with our grayscale reconstruction #351

Closed dchaley closed 1 month ago

dchaley commented 1 month ago

This sets up the build for our Cython replacement of grayscale reconstruction.

It also lifts h_maxima out of skimage, and replaces the h_maxima call with our own fast-hybrid implementation.

Related to #350, but not a full solution yet.

Paired with @WeihaoGe1009