Base "M" in the reference genome failed quip

dcjones / quip

Compressing next-generation sequencing data with extreme prejudice.

BSD 3-Clause "New" or "Revised" License

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Closed lh3 closed 9 years ago

lh3 commented 9 years ago

quip should just convert such bases to "N".

lynxoid commented 9 years ago

Ran into this two. I also happen to have 'RR' in the reference genome. Not sure what these mean (treat them as 'N's?)

dcjones commented 9 years ago

Thanks! Any letter (A-Z, a-z) is permitted now, and non-nucleotide characters are treated as N.