Computation of likelihood scores interrupted.

[GoogleCodeExporter]

I know was reported before, but there is no solution of it after they requested 
the log.

What steps will reproduce the problem?
1.Check the format using alter
2.Upload the file
3.Run the program

What is the expected output? What do you see instead?
The Calculations instead I have an error

______________
::Settings::

 Phyml version = 3.0
 Phyml binary = PhyML_3.0_macOS_i386
 Candidate models = 88
   number of substitution schemes = 11
   including models with equal/unequal base frequencies (+F)
   including models with/without a proportion of invariable sites (+I)
   including models with/without rate variation among sites (+G) (nCat = 4)
 Optimized free parameters (K) = substitution parameters + 185 branch lengths + topology 
 Base tree for likelihood calculations = ML tree
 Tree topology search operation = NNI

::Progress::

Model        Exec. Time      Total Time      -lnL
-------------------------------------------------------------------------

Computation of likelihood scores interrupted. It took 00h:00:40:09.
_________________________

What version of the product are you using? On what operating system?
jmodeltest 2.1.4

Please provide any additional information below.

Original issue reported on code.google.com by lgdag...@gmail.com on 26 Mar 2014 at 3:55

[GoogleCodeExporter]

Do you have taxa names with length 1 or strange characters? That's a common 
problem when ALTER doesn't find errors in the alignment. Otherwise, could you 
please send me the data it is producing that error?

Original comment by DiegoDL84 on 28 Mar 2014 at 10:19

[GoogleCodeExporter]

Hello Diego,
Thank you very much for your reply. Here is the file. But I think is a platform 
issue, I was trying to run it in a Mac OS X 10.9.2. Then I run it in parallels 
(Windows XP)the same file and works perfectly. For some reason it is not 
running fine with the new OXS system. 
Did you try the program in the new OS X system?
Muchas gracias

Original comment by lgdag...@gmail.com on 28 Mar 2014 at 10:50

Attachments:

• Scypho_H3_noambpos_edited_paup

[GoogleCodeExporter]

I guess it is a problem with the included PhyML binary, since the version for 
OS X is a bit old. New binary will be included in the next release as soon as 
possible :)

Original comment by DiegoDL84 on 28 Mar 2014 at 11:26

[GoogleCodeExporter]

Could you please try the new PhyML binary for OS X?  I attached it to this 
issue, but it is available at the downloads section as well. It was compiled 
using OS X 10.8.5

Original comment by DiegoDL84 on 3 Apr 2014 at 1:41

• Changed state: Started

Attachments:

• PhyML_3.0_macOS_i386.tar.gz

[GoogleCodeExporter]

Original comment by DiegoDL84 on 2 Sep 2014 at 8:30

• Changed state: Done

[GoogleCodeExporter]

Hello Diego,

I am sorry, I forgot to say, the file worked perfectly and fixed the issue.
Thank you so much

Original comment by lgdag...@gmail.com on 2 Sep 2014 at 4:51

[GoogleCodeExporter]

Original comment by DiegoDL84 on 2 Sep 2014 at 6:58

• Changed state: Fixed