Computation of likelihood scores interrupted.

[GoogleCodeExporter]

What steps will reproduce the problem?
1.Check the format using alter
2.Upload the file
3.Run the program

What is the expected output? What do you see instead?
The Calculations instead I have an error

Phyml version = 3.0
 Phyml binary = PhyML_3.0_win32.exe
 Phyml path = C:\Program Files\jmodeltest-2.1.6\exe\phyml\
 Candidate models = 88
   number of substitution schemes = 11
   including models with equal/unequal base frequencies (+F)
   including models with/without a proportion of invariable sites (+I)
   including models with/without rate variation among sites (+G) (nCat = 4)
 Optimized free parameters (K) = substitution parameters + 55 branch lengths + topology 
 Base tree for likelihood calculations = ML tree
 Tree topology search operation = NNI

::Progress::

Model        Exec. Time      Total Time      -lnL
-------------------------------------------------------------------------

Computation of likelihood scores interrupted. It took 00h:00:14:08.

What version of the product are you using? On what operating system?
jmodeltest 2.1.6 with window 7

Please provide any additional information below.
I run this file few days ago. But today suddenly it doesn,t work.
When i run with example files there is no error, that means the program is OK.
My data file is composed only numbers and nucleotide sequences.
I don't know why it has error
would you help me?

Original issue reported on code.google.com by chorong0...@gmail.com on 2 Sep 2014 at 1:19

Attachments:

• parmotrema_ITS_mito_align.nxs

[GoogleCodeExporter]

Could you please check the PhyML-log tab? It's odd that it worked before and 
now it doesn't. Just in case, I attached again the input file adding 's' to the 
beginning of the taxa names. Purely numeric taxa names should not be a problem, 
and actually I can run your alignment, but maybe there is some kind of problem 
in the windows binary.

Original comment by DiegoDL84 on 2 Sep 2014 at 8:29

• Changed state: Started
• Added labels: OpSys-Windows, Component-Logic

Attachments:

• parmotrema_ITS_mito_align.nex

[brunomioto]

I had this same problem. Then I tried jmodeltest-2.1.7, trimming long names (#22) and it worked! But > 2.1.7 didn't work.