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ddarriba / modeltest

Best-fit model selection
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aborted job error #55

Closed juliayork closed 2 years ago

juliayork commented 2 years ago

I am getting the following error:

modeltest-ng: /opt/conda/conda-bld/modeltest-ng_1616735378208/work/src/model/parameter_branches.cpp:138: virtual double modeltest::ParameterBranches::optimize(modeltest::mt_opt_params_t*, double, double, bool): Assertion `fabs(cur_loglh - loglh) < 1e-6' failed. /tmp/slurmd/job8810696/slurm_script: line 13: 158648 Aborted modeltest-ng -i transcript_tree7.raxml.reduced.phy -p 136 -d aa -o model_test_output.txt -t ml

When I look at the results file, the first part of it is all mis-formatted, like this:

23/152  /BLOSUM62+I+G4+F    4/152  LG+I+G4+F    5/152  DCMUT+I+G4+F    152  DAYHOFF+I+G4+F            60h:00:00/ 152   JTT+I+G4+F0h:04:50             0h:00:00   0h:00:00      0h:04:500h:00:00   0h:00:00   0h:04:50          0h:04:50                 7/152  -297760.3174MTREV+I+G4+F   -297519.78540h:04:50            1.67210h:00:00  1.4843-297519.17928-295228.6897  0.0213      -293510.9224

0h:04:501.4859 1718 1.4261 /152 FLU+I+G4+F 0.0213 20// 13 27/152 MTREV+G4+F / 152 MTART+I+G4+F 150h:00:00 / 28152/HIVW+I+G4+F152 HIVW+G4+F 30 140h:04:50 0h:00:00 /0h:00:00152BLOSUM62+G4+F/ 0h:04:50 152 160h:04:50MTZOA+I+G4+F 1.5694 0h:00:00 9 0.0213 0h:04:50-299704.7557 0.0213 11-299752.8409 0.0213 /

Can you help? Thanks.

juliayork commented 2 years ago

This is still an issue, it won't complete a job. Giving me the following error:

modeltest-ng: /opt/conda/conda-bld/modeltest-ng_1616735378208/work/src/model/parameter_branches.cpp:138: virtual double modeltest::ParameterBranches::optimize(modeltest::mt_opt_params_t*, double, double, bool): Assertion `fabs(cur_loglh - loglh) < 1e-6' failed. /tmp/slurmd/job8819456/slurm_script: line 13: 145687 Aborted modeltest-ng -i transcript_tree7.raxml.reduced.phy -p 100 -d aa -o model_test3_output.txt -t ml

juliayork commented 2 years ago

For anyone who might have a similar issue, I updated the version of ModelTest (I was using the conda version, which was not the latest) and it seems to be working now.