Closed ddediu closed 3 years ago
Reproducible example:
dfViZCheck <- structure(list(CHI = c(2645301355, 2645301355, 2645301355, 2645301355, 2645301355, 2645301355, 2645301355), AdhereRLabel2 = c("0403 Citalopram", "0204 Propranolol hydrochloride", "0403 Citalopram", "0501 Flucloxacillin", "0501 Nitrofurantoin", "0901 Cyanocobalamin", "0901 Folic acid"), DisDate = structure(c(1507593600, 1507593600, 1511395200, 563408000, 1564704000, 1583884800, 1583884800), tzone = "UTC", class = c("POSIXct", "POSIXt")), MarkerLength = c(56, 28, 56, 5, 7, 1e-06, 1e-06), Quantity = c(56, 84, 56, 20, 28, 100, 84), PISSectionCode = c("0403","0204", "0403", "0501", "0501", "0901", "0901"), AN = c("CITALOPRAM", "PROPRANOLOL HYDROCHLORIDE", "CITALOPRAM", "FLUCLOXACILLIN", "NITROFURANTOIN", "CYANOCOBALAMIN", "FOLIC ACID")), row.names = c(NA, -7L), class = c("tbl_df", "tbl", "data.frame")); medgroupsdf_FAIL <- c('04something' = "(PISSectionCode == '0403')", '04somethingFLUX' = "({04something} | AN == 'FLUCLOXACILLIN')", '04somethingFLUXLT50' = "({04somethingFLUX} & Quantity < 50)", 'Not04something' = "(!{04something})") mg_test_FAIL <- AdhereR:::.apply.medication.groups(medication.groups=medgroupsdf_FAIL, data=dfViZCheck, suppress.warnings=FALSE); cma1_types_FAIL <- CMA1(data=dfViZCheck, ID.colname="CHI", event.date.colname="DisDate", event.duration.colname="MarkerLength", medication.groups=medgroupsdf_FAIL, date.format="%m/%d/%Y"); cma1_types_FAIL; getMGs(cma1_types_FAIL); getCMA(cma1_types_FAIL); plot(cma1_types_FAIL, show.legend=FALSE) plot_interactive_cma(data=dfViZCheck, cma.class = "simple", ID.colname="CHI", event.date.colname="DisDate", event.duration.colname="MarkerLength", medication.groups = medgroupsdf_FAIL, date.format="%m/%d/%Y") cma0_types_FAIL <- CMA0(data=dfViZCheck, ID.colname="CHI", event.date.colname="DisDate", event.duration.colname="MarkerLength", medication.groups=medgroupsdf_FAIL, date.format="%m/%d/%Y"); cma0_types_FAIL; getMGs(cma0_types_FAIL); getCMA(cma0_types_FAIL); plot(cma0_types_FAIL, show.legend=FALSE) medgroupsdf_OK <- c('ohfoursomething' = "(PISSectionCode == '0403')", 'ohfoursomethingFLUX' = "({ohfoursomething} | AN == 'FLUCLOXACILLIN')", 'ohfoursomethingFLUXLT50' = "({ohfoursomethingFLUX} & Quantity < 50)", 'Not04something' = "(!{ohfoursomething})") mg_test_OK <- AdhereR:::.apply.medication.groups(medication.groups=medgroupsdf_OK, data=dfViZCheck, suppress.warnings=FALSE); cma1_types_OK <- CMA1(data=dfViZCheck, ID.colname="CHI", event.date.colname="DisDate", event.duration.colname="MarkerLength", medication.groups=medgroupsdf_OK, date.format="%m/%d/%Y"); cma1_types_OK; getMGs(cma1_types_OK); getCMA(cma1_types_OK); plot(cma1_types_OK, show.legend=FALSE) plot_interactive_cma(data=dfViZCheck, cma.class = "simple", ID.colname="CHI", event.date.colname="DisDate", event.duration.colname="MarkerLength", medication.groups = medgroupsdf_OK, date.format="%m/%d/%Y") cma0_types_OK <- CMA0(data=dfViZCheck, ID.colname="CHI", event.date.colname="DisDate", event.duration.colname="MarkerLength", medication.groups=medgroupsdf_OK, date.format="%m/%d/%Y"); cma0_types_OK; getMGs(cma0_types_OK); getCMA(cma0_types_OK); plot(cma0_types_OK, show.legend=FALSE)
Fixed ?
Reproducible example: